RNA id: AMCG00002769



Basic Information


Item Value
RNA id AMCG00002769
length 5670
RNA type mRNA
GC content 0.58
exon number 17
gene id AMCG00002769
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 1919040 ~ 1944943 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCCTTTGCATGGGAAGATCGTGGTGATCAAGAGGAGCGGCGCGGACGGGACGGAGTTCCCTCTCACCGCGGCCTCCTGCTTGTTTGGGAGGAAGCCGGACTGTGACATTCGCATCCAGCTGCCTCATGTCTCTAAAGAGCACTGCAGGGTCGAGGTCAACGAGAATAAAGAAGTGATCATTACCAACCTGAGTTCAGTCAATCCGACTCGTCTGAATGGTCAAGTTATTGAACAGGCAGGACGCTTGAAGCACGGAGATCTGATCACAATTATTGATCGTTCTTTTCGGTTTGAGTATCCGCCAGAACCAACTCCCAAGAAAACAAGACCGTCGGGAGCTGCGAAGAGTGAAACCCTTCAGgTGCTTCATATTCAGCAGGTGAAAGATGCAAGTCACCTGTCTTCAGGAAACCGAAGGAAATCGGCTCAGCTCATGTCAGATTCCTCCTATGATCTGAAAGAGGCGAAAGATACTGGCAATGAACAAGTTCATAAGGATCCAGATGGCGGGGAAACCAAGAGTGGCGGAAAGGAAGCGTTCGGCACAGGACCAGAACCGGTCCAATCGAATGAAAACAAGGATCCATTCGGTGAACTTTATGAGATGGTGAAACACAATTTTAAGGCGAGCGACAAGCGCGAAAAATTGGCATCTAACGCGGCTGCCAGGTCACCGTGGCCGACCTCGGGAAGCCCAGATGCCAAAACGCCGAGACGAGAGCCGGAGATGATCATTCGCACCCCGGTTCCAGAGAAGCATGTCCTCGCAGACAAAGACGAACTGAATCGGGAGTCGAATGCCCAGTTTACTCCATCCAACAAGAAGACCCCGGTTAAAAACGAAAGCGCGACTGTTAGCGAGACATCGGCTGCAGAGGCCAAAGTGACCGGCCAGACCCCTAAAGGTACACCGAAACCCACCAGGAGGAGTAAGAAACCGATTGAAGAGAATTTGGATACTGATGTCAGCGATGAGACCCAGCTGAAAACATGTGACGTTCCCACGTTGCCTCTAGAGCAGACCAGCTCTCCCCTGACTGCCTCAGGAGCTCCTGGCGCTGAAGAGAGCCCCCGGAGAGGCCAGCGCTCTTCCCAGGCTCTTGCAGAGGTGGCCAAGACACCCAGCGCGCCCGTTTCTGAGAAGAAAGCGAGGCTGGTGACTCCCTGCAGGCTGAGTGCCGAGGAAGTGGTGAGAGAGCTCCTCTCGGAGAGTGACATGGCCGTGGAAGAGAGCGTGAAGACAGACGCGacctccaaaggaggaagacgGAGGAGGAGTAGGAGTCGGGGATCTTTCACTGAAGTGGCTGTGGTGGAGGAGCCTGTCGTGTCCCCCAGGAGGACAAGCCGGTCTCTTTCACCGGGGGCAGGGACACCAAAGGGTAATGGCTCTGAAGAATCCGCCAAGATTGTGAAGAGCAGTCCAAAAGTGAAGCAATCCCCTAAGCAGTCTCCTCGTGCGTCTCCAAGAAACCTTTCTGGGAAAGCCCAGGAAACTGGATCGCCAGCTCCACCTAGTGGGACAAAGGCAGCAGTGAACACAGAAAAGCCTAAGAAGCGTAGGAGTGGGGAACTGGCAGAGAAATTGGCAGAACCTCCTCTCAAGCGAAAAAGGGAATTAAGTCCCAAGAAAAAAGCTTCACCCAGAAGGTCATCGACATCACCCCCTAAGAAATTAGGTGCTAAAACTCCATCTCCGGCGAAATCGGCCTCTCCTGGTCGGAAGTCCCCCTCTGGCACCAGTAAGAGTCCGTCCCCTGCTGGAAGGAAGAGCAAATCTCCTTCCAAAGAAGATCCCACCACACCAAGAGGCCGGAAATCTGGCACTACGCCGGCCAAGACCCCGTCCCCAGTGCGCAGCCCGGCCAAGACCCCGTCCCCTGGCAGGCGCTCGCTCTCTAGTGCTGTTATGCCCTCCCCGGCTCTCTCTGTGGCTGCAACACCCCATGGGAGAAGATCTGGCTTCGGTGATGCCTCTCCAGTCAAATCTGTACGCAGCACACCAGCAGCCAAGACGCCGTCCCCAATCGAGGCCGTGGCCAGCCCATCCCACGGCCGGAGATCCTCTCCCGCTGCTGCCAAGAAGACCCCCTCCCTGGCAGTCAGGTCTCCGGGCAGAAAATCCCTCGCTGGTGGTTCCAACACCCCACTTTCTTCAGGCGCGTCCCCCAGTCGCAGTGTGAAGACCCCTTCCTCCGGCAGGAAGAGCGCGGCTTCATCGCCAGGCCAGGTGCAGACCCCGGTGGTCCGCGGGCGCTTCTCGGTGTCGCGCATCAGCACCCCCTCGCCTGTGGCCGACGAGAAGGGAGATCTGGCCGAAGTACCTGCTCCGGCTGTCACATCGAAGGCTGCACTGAGGAGGAAGAGCATGAAGTCCACATCCAAGAAGACTCCGTCCATCAGCAGGAGGAAGAGTGCCATGCTGGACGTCGTGCGCTCCAGGCGAAGTGGGGCATCTCAGGCGAATCTTGTTGTTCGCTCCTGGGCCGATATTGTAAAACAAGGGGCTTTGAAGTCCCAGGCTGGTGTTCCTGGGAAGAAGCGCACAATGAAGGGGAAAACTGTTAAGAAAGCGGCGCCGGTGCCACAGACCCCGGCTCAGAGAGTCAAGCAGCACTTCAGCACCGGACATGCAGCGTCCCCTGCCACCATCGTCATTGGACGGGCCCACAGCAAGGCCGTGCTGCCGGCGGGCCGCGCCCCCAGGCTAGTGCACAACGTGGCCGTGCTCAGGAAGAACCTGGAAATTAATGAGAACTTGACCGGAATTGCGGAGATGTTCAGCACACCGGTGAACGAGAGACAGAGGAGAAATCGCCAGTCCAGCGACTACTCTGGAGCCGAGGCTGCTCAGGATGTGGTTTATTCACCACTGACCGAAGCGTCTGTAATGAACACCCCTGAAGAGACGGGTGAAATGGTTGTCTCTCCACTGAGTGTCACCAGCACTGCTAAACAGGGACGCTACAACAAGGATGCCGTGTCTCGTCTCCTCCAAGAGAGGACTTCCAGCTTTGACACAGTTGGGACACCTCTGGTCAAGAGCTCGACCGTGCGCAGAGCTAGTGCTGGGGACTCCGTGACCCCTAAAGAGAAGGTCCAAGCTGTCAAAATGGTCTCCTTAGAGGCTGAAGAGCCAGCCAGACCTACGAGGCTCTCGACACCCAGACAGAAGGCCGAGCCGCCGCTGCCCCTGACGGGAGTGAAGAGGATCATGACAACTCCCAAACAGAAGACCCAACAACTGGAGGACCTCCGAGGCCTGAAGCGGCTGCTGAAGACCCCGAGAGGCCCGAAACTAGTCGTGGAGGAATCTCTCGTGGGAGTGAAGGGATTGGTCAAGACTCCGAAGACTAAGGGTCATCCAGTAGAGGACATGGTTGGTGTGAAGAGGGTGATGCGGACCCCGAAGACGAAGGGGCAGCCGGTGGAAGATCACTTTGGCATCAGCAGACTGGTGAAGTCCCCTAAACAGCGAGGCGGCCCGGTCGAGGACTTCACCGGGTTAGAGGAGCTCTGGCAAGAGCCTCTGCAGAAGCTGGACACGAGCAAGACTGAGCCTGAGAGCAAGgtgtcGGAAAAGGTGCTCTCTCCTAAGCGTGGTAAAACATCAGGCAGCTTTACGGAGATGACTGTTGaaaacaaagtaTCTTCTCCAAAGCGTGTCGCACAACCAACAGAAACCCAGAATGAAGCAGAAACGCTGCTGTCTTCAGTGCAGAAACCTGGACGGGGAAGGAAGGCAAAGGAAAGTGCGGAGGCTTCGACTGAACCACGGACCGCCGTGCCGGCGCTGAAGCGGCCCCGTCGGGGGAGAATCACAGACCTGTCGGAGGAGACCCCTGCCTCCGTGACTAAATCTGCAAGAGGGAGGAAGGTAACGCAGAAACAAGTCTCGTTTGAAGCAGCGGAAGTTGCTCTGATGACCCCTGCAGTTAGGAGGACACGTCGGGACCCAAAAAGTAATGAACTGGACTCCACTGCCTCCCCTGCGCCCACCGTGTCGTCCACAAGAGGGCACAAGGCCAAGATTGGTGCAGAGCCGACTATTCAGGTGGTTGTGGAAGCTGCTGACCCGATCCCCCAAAATGTCACCGCATCCCCTGCTGTTAAGACGCCAAGTCCAGTAGAGACCCCTGCCGCGGAGTTAGAGGAGGTTCCGGCTCCGGTCAAGAGACCTGGAAGGGGAAGAAAGGCGAAACCGGTCCCGAAGGAGGAGGGTGCACTTGGCACGGAGACTGCTGCGGAGGAAAGTGTCTCTGAAAGTGGGAGGAAACTCTCCACACTCAAACGTGTCAGCGCCATAGATGTACAGGCAACCGCTTCTCCGGCCCCGGCGAAGAAGATGAGACGAGGCAGAAACGCTCGGCCGATCGAGGGTCTCGGCCCGGTAGCTTCAGAAGCGGAGCGGTCGGTGGCTGAAACGGTGGGAGTTAAATCTGTTTCTCCGGTTCCAGTGAGAACGGCAAGAGGCAGAAAGGCGAGAGTTGAAGTGGAAGAAGTGGAACAGACTAAAGCTTCAAAGTCACTGCCACAAAGGTCAGCTCGTGGAGGAGCTAAGGGTGCCACGCCCCAGATCTTTGCCTCTCCTGCCCCTGCCAAACTGCCTGGGCGAGGAAGAAAGGCAGCAGAGAAAGTGGAGAAGATACTTCCATCAACCGCCGAAAGCGTCCGTGATTTGCCCACATCCAAGAGGGCACGGAAAGTAGTGATCTCCAAAGAAATGTCTTCCACTCCTGCCAGGACAGTTAGAGGGAAGAGTAGTGCAACCCCTTCTTTGGAATCTGCTCCCCCTGCTAGGAAAGGAAGAGGACCGGGTCCCAAGACCGCTCAACCCACTGCGGACCTCAGAGCTGAAGCCGTCCCGGCTGCTGTGAAAAGAGGGACCAAAAGGAGAGCAACCTGCGAAGAGGTCGTCCAAGCAATCCTGGAAGACCCATCCTCTTCAGATGCGTCCAGCGCTGTGGCGCCGAAGAGGCCGCGAGGGAGGACGGCCAGAGCACCCGCCGCCGACCTGCCGAAGGAAAGAGATAATGCCGCCAAAGCCGCAGCGGAGACGAGTAAAAAGGGGCCACGCTCGAGGCGCAGGGATGGTGAGACGGCGGAGACGTCTGAGGAGCAGCCCAGGGAAGAGAGCAAGCCCCGGCCCACAGAGGTTTCACCCAAGAAACCCGTTGGCAGGCCCAAGAGGAAGACGGCCCCAGAGCCCGAAGTCCCGGCTGCCGTCCCCAAAACCCCCAGAGGGCGACGTGTGGCGAAAGCTGCTGTTGAGCCCAAAGCTCAGCCTCAGGAGGAAGACCTGGGGTTTGACAAAGGAGTTCAGAGCCCCGGTCCGGCTGTAGGGAGACCCAGGTGCTACGACAACGAACACAATGAGACGTTAAAAGTAATGAACTGGAAACTGCTGCATCCCCTGCACCTGCCGTCCATGAGAGGCCGGCGCCGTGCGGAGAGGGGCTCGGTGGATCTGCGGCGGCCCCTGGACGTCGTACCCAGAGATGAGCACTGCTGTGTGAGGAAGTGTAGCCCTGCTCTGCGACGGCTGGAGTGGAGGCTCATTAACCCACCTCTCTCGTTAGCCGCCCTGCTCTTGATCTCGTACAGCAGGGCAGCGCACCTCTCCTCGGCTCTCCTGCGCCCTTTTAGAGAGAGCGCCAACCGGTCGTGA

Function


GO: NA

KEGG:

id description
K17582 MKI67; antigen KI-67

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU174258 lncRNA downstream 400987 1489562 ~ 1518053 (-) True G138535
TU174126 lncRNA downstream 1020623 895012 ~ 898417 (-) False G138430
TU174128 lncRNA downstream 1020623 895012 ~ 898417 (-) True G138430
TU174129 lncRNA downstream 1020623 895012 ~ 898417 (-) False G138430
TU174099 lncRNA downstream 1111982 805760 ~ 807058 (-) False AMCG00002743
TU174334 lncRNA upstream 138955 2083898 ~ 2084097 (-) True G138594
TU174435 lncRNA upstream 557170 2502113 ~ 2502314 (-) True G138678
TU174481 lncRNA upstream 746487 2691430 ~ 2691869 (-) True G138720
TU174502 lncRNA upstream 762926 2707869 ~ 2708075 (-) True G138737
TU174503 lncRNA upstream 769434 2714377 ~ 2714688 (-) True G138738
AMCG00002767 mRNA downstream 367056 1541186 ~ 1551984 (-) True AMCG00002767
AMCG00002764 mRNA downstream 508912 1395011 ~ 1410128 (-) True AMCG00002764
AMCG00002758 mRNA downstream 815142 1094995 ~ 1103898 (-) True AMCG00002758
AMCG00002755 mRNA downstream 849646 1035547 ~ 1069394 (-) True AMCG00002755
AMCG00002756 mRNA downstream 884441 1033446 ~ 1034599 (-) True AMCG00002756
AMCG00002768 mRNA upstream 5440 1950383 ~ 1968438 (-) True AMCG00002768
AMCG00002771 mRNA upstream 111484 2056427 ~ 2058241 (-) True AMCG00002771
AMCG00002772 mRNA upstream 182687 2127630 ~ 2168579 (-) True AMCG00002772
AMCG00002775 mRNA upstream 344165 2289108 ~ 2329191 (-) True AMCG00002775
AMCG00002782 mRNA upstream 496928 2441871 ~ 2444589 (-) True AMCG00002782
TU174137 other downstream 993642 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 994806 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 994806 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 1097449 812745 ~ 821591 (-) False AMCG00002743
TU174098 other downstream 1108035 808155 ~ 811005 (-) False AMCG00002743
TU174506 other upstream 773265 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 1992821 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 2056707 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 5117530 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 5403868 7348811 ~ 7352821 (-) True AMCG00002945

Expression Profile


AMCG00002769 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

AMCG00002769 Expression in each Bioproject

Bar chart with 7 bars.
AMCG00002769 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.