RNA id: AMCG00002770


Basic Information

Item Value
RNA id AMCG00002770
length 2001
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00002770
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2019238 ~ 2022826 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGTCCCCCTTGAGGACACAGCTGGGGATTAACATGTCATGGGTGTTTAAACATGTACGGAAACATCACAACTATTTCACGTATGATCGATAACCTTTTTTTATGGGGTAGGATAATAAAAGAACACTATGACAACCCTGCTTCACTTGACCAAAGTTCAGACGCTTCATCAGAGCCTTTATTGCTCTCGCGCCGATCAACGTTCACTTCTTTCCATTTCCTGCTGGGAAAGATTGAGCCGTGGGAGAAGCCGTGTCTGTGTCGACACCAGGAGCGGCCGTGGGTTTCAAGCTGACAGAGACGCCTGTGAAGAAGCGGGCAGCGAGGGAAGCTGTGCAGCCATGCCGTCCACCACAAAAACGTTGTCTTTCCTGTCCGGAGCTCTCTGCACTGCCATCTGCGCCTCGATTCTGTGTTTCACGCTAGCCTCGAACGAATGGATCTTTTCCACAATGATCTGCAAAGGCTTCAATCAAACAGAAGGGAACGGGACTGCTTACATCACTTTTGGACTTTTCCAGGCAGTAGGGAGTCGAAGCGCCTGCCCGACGTTCGGTACGCCTCTCACGATTACAGtTTTGACATCTCTAGGCGAGCGGGGGGGTGCCCCAAACATCCTTCACAACATGGTTATAGCATTCATCATCCTCAGCCTGATCAGCTCAGCATTAAGCTTCATTATCACCATGTACAACAGTGTCAGCAACCCCTTTGAGACCTACATGGGCCCTCTGGGACTGTACACCACCAGCTCCATTAGCGCCATCCTCATTCTTCTCTCGATCATCTTGTTTGTGGTGAACGCCGAGACAAGTGCCCTGTCGGCGGAGATCATAAAAGGGGACATACAGGAGAACGTGGACCTTTACGACATCCAGAACACCATGAAATACACCTTTTACCTCCTGATCCCTGCTCTCGTCTGCAGCCTCCTCGCTATCACCGTGATCTACATTTACGAGCACGCCCGATACCACCAGCAGAAGGAGCAAGAGAGGCCCACAGAAGACGCACCGAAAGAAGTGATGATGTACTAATGGGTTTCACCTGCCGGGACACTAACAAATCCCTGTTCAAATTCATCTcaaatttaaaatctgtgtaGCTTGTGTAATGGTATGTCTATAGTATTATTATGTTCCCTCCCTTGAGAGTACAACCCAGCTGGTTCTGTAGCTCAGATTAAATCGTTACCTGCTTTGGACAGAGGGAGGCGGTTGAATCGGTCCACAGACCAGAGTCACAGGTGAAATGAAAGCCACTGTGTTTGTGGAGGACCAGAGTGCAGAAATACTGGTCTAATGAAATGAGATTTAGACTCTCCCATTAAAAGACATCAAAGTAAATTTAGcccatgaaaaataaactgttctaGAATCTAGGAACAAAGTACCAAAGTGTTGTCACAGACGCTGTGGTTTTAATATGGCATTTTCCCAAGAAGGAGATGATCTTAATAATAGTAGAATATTCAAAAGACTTTACAtactgattattttgtttttaaatatctttcttTTGGGGATTGTGTGTCTATCAGGGGCTCACAGGAACTACAATGTACAGCTTGTCACGTACACAAAGAGTGTTTATTGCTGATGGTGCTCACTGAAAGAGACTAAGTTATATTAATTCAAATCCTCATTATTACACTTCACCATTATGCTTCTATAATGTATTATGAACTACTTATCTCTGTTCTCTCACCTCTTTAAGGTGTCTAagttttaacatatttaaatattcatgttcTCTGTGAATTATTAGAGCACATGTTTTCCTGTCCACTTCTACTGTTAAATCTGTCACTGAGTGATGTCTTCAAATCTTTCCTGAACGCACGTGGGATGCCATGTACATAAACAAATGAGAACCATGAGACTGGATGttcaaatataaacatatgtCTCATGTTTGTTCtaaaaagtgtttcaaatgattttgcagtcgttgtgttattatttgttgctctaaaattaaataaaggacaTCTGAACGTGA

Function

GO: NA

KEGG:

id description
K23841 CLRN; clarin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174289 lncRNA upstream 80113 1938147 ~ 1939125 (+) True G138562
TU174210 lncRNA upstream 623975 1375707 ~ 1395263 (+) True G138502
TU174181 lncRNA upstream 930422 1088439 ~ 1088816 (+) True G138475
TU174084 lncRNA upstream 1080743 938147 ~ 938495 (+) True G138399
TU174074 lncRNA upstream 1108158 909387 ~ 911080 (+) True G138393
TU174333 lncRNA downstream 37551 2060377 ~ 2060604 (+) True G138593
TU174384 lncRNA downstream 438812 2461638 ~ 2463636 (+) True G138634
TU174473 lncRNA downstream 642632 2665458 ~ 2667538 (+) True G138712
TU174480 lncRNA downstream 668603 2691429 ~ 2691840 (+) True G138719
TU174604 lncRNA downstream 1150081 3172907 ~ 3177610 (+) True G138816
AMCG00002765 mRNA upstream 506154 1504997 ~ 1513084 (+) True AMCG00002765
AMCG00002766 mRNA upstream 526483 1483016 ~ 1492755 (+) True AMCG00002766
AMCG00002763 mRNA upstream 582336 1429991 ~ 1436902 (+) True AMCG00002763
AMCG00002762 mRNA upstream 609180 1406611 ~ 1410058 (+) True AMCG00002762
AMCG00002759 mRNA upstream 753261 1250825 ~ 1265977 (+) True AMCG00002759
AMCG00002774 mRNA downstream 210461 2233287 ~ 2240892 (+) True AMCG00002774
AMCG00002773 mRNA downstream 231203 2254029 ~ 2257547 (+) True AMCG00002773
AMCG00002776 mRNA downstream 327223 2350049 ~ 2374439 (+) True AMCG00002776
AMCG00002777 mRNA downstream 383209 2406035 ~ 2440932 (+) True AMCG00002777
AMCG00002780 mRNA downstream 427364 2450190 ~ 2459837 (+) True AMCG00002780
TU174215 other upstream 609150 1407046 ~ 1410088 (+) False AMCG00002762
TU174214 other upstream 616809 1401289 ~ 1402429 (+) True G138506
TU174182 other upstream 921763 1095939 ~ 1097475 (+) True G138476
TU174180 other upstream 926286 1089278 ~ 1092952 (+) True AMCG00002757
TU174083 other upstream 1088640 926469 ~ 930598 (+) True AMCG00002748
TU174426 other downstream 469260 2492086 ~ 2494594 (+) True AMCG00002784
TU174568 other downstream 1084632 3107458 ~ 3116081 (+) True G138790
TU174694 other downstream 1405863 3428689 ~ 3596108 (+) True G138888
TU174764 other downstream 2006698 4029524 ~ 4029924 (+) True G138941
TU175054 other downstream 3073905 5096731 ~ 5098744 (+) True G139176

Expression Profile