RNA id: AMCG00002781


Basic Information

Item Value
RNA id AMCG00002781
length 1932
RNA type mRNA
GC content 0.54
exon number 10
gene id AMCG00002781
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2460051 ~ 2466695 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAGGGCAGCAGTGGCCTTCCCTACAACATACACCGGTTTATCCTTCCACTTGTCCTTCTGTGTCTGAATCCAGtCCTCTTCCCCCTCCAGACAGCGTCTCAGCGCCTCCACGGCTCGGGGGCTGGTGAAGATAAGACCCCCGTACTTCTCCGGCTGGAAGAGCTTTTCAGACAATGTGGAGAGAGACACAAATTCAAAGGACAACACTGGGATCAGGGTCGCTTTGATGCCATGGGATGACAGTGCCTGTAGGTAGAAGAAGAAGCAATAAGACCATTGGAGACATTTTAGTGCaaTGTTGTGCAGCATGGCGTCCTCCGCGAAAAGACGAGCCGTGGGAATGGCCGAGAGCccggggaaggaggaggaggacagctCGGATGAAGGgctggaggaggaaggagaCTCGGGAGAGGAGGACACCGACGACTCGGACGAAGAGATCGGCGAGGAGGTGAATATTGACTTTGAGGCTCACGCAATGTCCCACAACGACCACAACGGGATCAAGAAGCTATTGCAACAGCTGTTCCTGAAGGCCAGCGTGAACCTGCCGGAGCTGACCGACCTCCTCATCCAGCAGAGCCACATCGGCAGCGTCATCCGACAAGCGGAGGTCCCAGAGGACAGCGATGACGAGGACCCCGATGAAGTGTTTGGGTTCATCAGCCTGTTGAACCTCACCGAGAGAAAGggcaCCCCGTGTGTGGAGCAGATTAAGGAGCTGGTCCTGGGCCACAGCGAGAAGTGCTGCCCCCACAGCGACACCGAGCAGCTGGAGAAGATCCTGGAAGACACCAGCAAGCCTGTGGGTCTGCTGCTGAGTGAGAGGTTCATCAACGTGCCGCCACAGATCGCCCTGCCCCTGCACAAGCAACTccaGGAAGAAATCGCCGAAGCCCAGAGGACCAACAAGCCCAGTGGCAAGTGCCATTATTACTTGATGGTCAGCAAGACCTGCAAGGAGGCGAAGAGCAGCAACGTGAGGAGAGTGGGCGCCCCAAAGACGGAGGAGCTGAGGTTCGCCAACGCCGAGGAGGAGTTCTTTTACGAGAAAGCAACCGTGAAGTTCAACTACTCCGTCCAAGAGGAGACCGACTGCTGCCTGGGCGGCCGCTGGTCCTTCGACGACGTCCCCATGAAGCCGCTCCGCACCGTGATGCTGATCCCCGCCGACAGGATGGGCGCCATCATGGACAAGCTCAGAGAGTATCTGACCGTGTAGATCTGGACGAGCGTGACGTGGAAGATGCCGGTCAGCGATTTACGCGACGGCCCTTTTTGTTTAGGATGCGAGTGTGTGGAAGGCGCAGAGTGAACTGGGAAACGGTCCTTCGCTGAGCTTGTGAGGAATTAGTCTTGACAAGTGTGGTTCTCCTCAGGGCGCGTTACAACCTCACGCACTTCTATCCTAATACCGACTGATGAACGTGTACTGATGttgagtgggtgggggggagctcAAATTGAGCAACAAGGATAATGGCGGGcggtatttagtttttttccccttcatctCATTCAGATTAGTCGATCTCTCAGAAACAGGAAACCCGTCTCCCGCCTGACCATTCTCTTGTATTTTGTCTCGATTAAAATGCGATCCCGTGACCCTGAAAAATCTGATCTCGCCCAATATTATTCCCATCTCTTGTCCAGAACTCCTGTCCAGTGTACAAACCCGGCGCCGATTCGGTATTTGATGCGATTCGGACCAAAACTCAAAGcggtttcatttgaaataatttaatccataaagcacatactgtacataaGATATTACATTGTCATCAAAGCATCTGACCGACAAAATTAAAACCTGGTTTTCGGAACGAGCTGTACCGTGTCGCCTGTCATTGAAGTACCAACGAGAAAACTGTGTGTGCAAAGATTGTTCTAGTGTCTTCCTACTGGTGTGCAGTGTTACAGTG

Function

GO: NA

KEGG:

id description
K15262 BCP1, BCCIP; protein BCP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174334 lncRNA downstream 375954 2083898 ~ 2084097 (-) True G138594
TU174285 lncRNA downstream 526056 1933360 ~ 1933995 (-) True G138559
TU174258 lncRNA downstream 941998 1489562 ~ 1518053 (-) True G138535
TU174128 lncRNA downstream 1561634 895012 ~ 898417 (-) True G138430
TU174435 lncRNA upstream 35418 2502113 ~ 2502314 (-) True G138678
TU174481 lncRNA upstream 224735 2691430 ~ 2691869 (-) True G138720
TU174502 lncRNA upstream 241174 2707869 ~ 2708075 (-) True G138737
TU174503 lncRNA upstream 247682 2714377 ~ 2714688 (-) True G138738
TU174507 lncRNA upstream 253717 2720412 ~ 2720704 (-) True G138742
AMCG00002783 mRNA downstream 9910 2445929 ~ 2450141 (-) True AMCG00002783
AMCG00002782 mRNA downstream 15462 2441871 ~ 2444589 (-) True AMCG00002782
AMCG00002775 mRNA downstream 130860 2289108 ~ 2329191 (-) True AMCG00002775
AMCG00002772 mRNA downstream 291472 2127630 ~ 2168579 (-) True AMCG00002772
AMCG00002771 mRNA downstream 401810 2056427 ~ 2058241 (-) True AMCG00002771
AMCG00002785 mRNA upstream 13363 2480058 ~ 2491883 (-) True AMCG00002785
AMCG00002790 mRNA upstream 168596 2635291 ~ 2654410 (-) True AMCG00002790
AMCG00002791 mRNA upstream 194211 2660906 ~ 2671073 (-) True AMCG00002791
AMCG00002799 mRNA upstream 281417 2748112 ~ 2749307 (-) True AMCG00002799
AMCG00002797 mRNA upstream 284094 2750789 ~ 2751466 (-) True AMCG00002797
TU174137 other downstream 1534653 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 1535817 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 1535817 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 1638460 812745 ~ 821591 (-) False AMCG00002743
TU174098 other downstream 1649046 808155 ~ 811005 (-) False AMCG00002743
TU174506 other upstream 251513 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 1471069 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 1534955 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 4595778 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 4882116 7348811 ~ 7352821 (-) True AMCG00002945

Expression Profile