RNA id: AMCG00002783


Basic Information

Item Value
RNA id AMCG00002783
length 393
RNA type mRNA
GC content 0.68
exon number 2
gene id AMCG00002783
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2445929 ~ 2450141 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCCGGCGTGAGGGTGTCCGGGTCCGGGTCCGGCACCGACAGAGCAGCGCGGCGCGGCGCGGCGCAGGGATCTGGGATCGGCAGTCCGCCCTGAGGAGGCCACTGCCCGGAGCAAGAGCGCAGGTCGACCCTAGTCCATCCAACACTTCGCGGCCGCCCTGCGCGCAGCCGGCCGGGCTGCGGAGCTCCACCGCGGCTTGCAGCGCCTTCTCTCGAGGGCTTTCCAAGCCGGACCCCCCAGTGGTGGGCAGAGTGAATCACCACTGTATCGAGCTGGACTGGGACAAGGCCGGGACGCTGCCCAGGGGTGGCCCCCCGGACACGTGGCTGCTTTTCTCTCTGCAGGAGGAAGACCCCAAGAGTCACACATTCGCAACCGTTTACATGTGA

Function

GO:

id name namespace
GO:0072329 monocarboxylic acid catabolic process biological_process
GO:0017001 antibiotic catabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0019541 propionate metabolic process biological_process
GO:0019543 propionate catabolic process biological_process
GO:0009062 fatty acid catabolic process biological_process
GO:0019626 short-chain fatty acid catabolic process biological_process
GO:0046459 short-chain fatty acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174334 lncRNA downstream 361832 2083898 ~ 2084097 (-) True G138594
TU174285 lncRNA downstream 511934 1933360 ~ 1933995 (-) True G138559
TU174258 lncRNA downstream 927876 1489562 ~ 1518053 (-) True G138535
TU174128 lncRNA downstream 1547512 895012 ~ 898417 (-) True G138430
TU174435 lncRNA upstream 51972 2502113 ~ 2502314 (-) True G138678
TU174481 lncRNA upstream 241289 2691430 ~ 2691869 (-) True G138720
TU174502 lncRNA upstream 257728 2707869 ~ 2708075 (-) True G138737
TU174503 lncRNA upstream 264236 2714377 ~ 2714688 (-) True G138738
TU174507 lncRNA upstream 270271 2720412 ~ 2720704 (-) True G138742
AMCG00002782 mRNA downstream 1340 2441871 ~ 2444589 (-) True AMCG00002782
AMCG00002775 mRNA downstream 116738 2289108 ~ 2329191 (-) True AMCG00002775
AMCG00002772 mRNA downstream 277350 2127630 ~ 2168579 (-) True AMCG00002772
AMCG00002771 mRNA downstream 387688 2056427 ~ 2058241 (-) True AMCG00002771
AMCG00002768 mRNA downstream 477491 1950383 ~ 1968438 (-) True AMCG00002768
AMCG00002781 mRNA upstream 9910 2460051 ~ 2466695 (-) True AMCG00002781
AMCG00002785 mRNA upstream 29917 2480058 ~ 2491883 (-) True AMCG00002785
AMCG00002790 mRNA upstream 185150 2635291 ~ 2654410 (-) True AMCG00002790
AMCG00002791 mRNA upstream 210765 2660906 ~ 2671073 (-) True AMCG00002791
AMCG00002799 mRNA upstream 297971 2748112 ~ 2749307 (-) True AMCG00002799
TU174137 other downstream 1520531 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 1521695 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 1521695 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 1624338 812745 ~ 821591 (-) False AMCG00002743
TU174098 other downstream 1634924 808155 ~ 811005 (-) False AMCG00002743
TU174506 other upstream 268067 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 1487623 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 1551509 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 4612332 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 4898670 7348811 ~ 7352821 (-) True AMCG00002945

Expression Profile