RNA id: TU174426


Basic Information

Item Value
RNA id TU174426
length 1256
RNA type TUCP
GC content 0.51
exon number 4
gene id AMCG00002784
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2492086 ~ 2494594 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAAACAGCCCAGGAGAGAATAACATCTAACCCTGCTCGTGCTAAGGGCGCGAATGGCATGCGCTTTTGCAAAACGCAGTATTTATAAAAAGCaagaacatttaataaaagccTGGCTGAGGTGCGCGAAGGACGTGACACACACGTTTCATGACGAAATAAACGCAATTTGAGCGCAAAGTGCGGGGCCGAGCGGGCCGTTTCCATGGTTACCGCCAAACCTGCCCCGCACGCAGATCAGACCGCAGTGCTGCCACACGACAGACGtgacacacacatgacacacacatgacacacacatgacacagtTTACTGGAAACTTAACATTACGGAATACGTAACTAGTAACAATCAAAATGGCAAAAGGCAACAAAAGTAACCCTTCTAAGGACAGAGATGGAAACTGGGATTGCCTCCTATCCCGCTGGTTAGGACACCGGCCACAAGCACGGGGGCCACGCTGGGGCAGACAGGGGCCACGGAGAGATACCCCAAGATCTGCAAAAGCCCGGAGAGGaaatCAGAGAAGCGAGAATACCCATTTTCAGCGCATGACAACCGCTTTGCATTACATCGTGCTGTTGACATTTTTGACATCGGACTGGGCCGCCGGAAAGTCGGCAACGGACAATCACTGCACGGCTCCCACAACTTTCACCTGTGGGCCGCGGGCCCCGCGCCCCGTGTGTCCAGAGCAGCAGACGGCATGACCTTCTACCATACAGATTTCCCCAGCTTCCCGCACTCGGGGGGCCCCAGCTGGCGGCGCTTCCCCAGGAACCACGCCCAGGCGTCCAACAGGGCCGCGGCCCCGGCGGAGGGGGACCCGCTGTGGTTCGGACGACACGACGATAACCAGCGCGTTCCCCTCGCCGTCCTCGCCGCCACACAGCGTCCCTCCGCAGCCAAACCCTGGTCCTACTCCTTCCACAATACATACCCCTGCGGCAAGTAAGGTCTGGAGGTGACAAAAGCTCGGGATTTATTagattaaagtattttctttgtgtgcaACCGTTTCTTCAATTAATGGGGctattctgcttttatttttgattgtaaATTTTGCCTGCAGGCATAAGTTAGCTTTCAGTGTAAAAGAAAGAGGCAGAAAAGACATTCACACTAATTATCAAAACAGCACttatgtttgcttatttgtatttttacaacttGATAATGGAGAAAAACTAATCCTAGTTATTGTagcacattttacaaaatagtagtaataatgaaAAGCTGCTGAAGAGAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174384 lncRNA upstream 28450 2461638 ~ 2463636 (+) True G138634
TU174333 lncRNA upstream 431482 2060377 ~ 2060604 (+) True G138593
TU174289 lncRNA upstream 552961 1938147 ~ 1939125 (+) True G138562
TU174210 lncRNA upstream 1096823 1375707 ~ 1395263 (+) True G138502
TU174181 lncRNA upstream 1403270 1088439 ~ 1088816 (+) True G138475
TU174473 lncRNA downstream 170864 2665458 ~ 2667538 (+) True G138712
TU174480 lncRNA downstream 196835 2691429 ~ 2691840 (+) True G138719
TU174604 lncRNA downstream 678313 3172907 ~ 3177610 (+) True G138816
TU174676 lncRNA downstream 881652 3376246 ~ 3378027 (+) True G138871
TU174711 lncRNA downstream 1232903 3727497 ~ 3727731 (+) True G138903
AMCG00002778 mRNA upstream 15480 2471904 ~ 2476606 (+) True AMCG00002778
AMCG00002779 mRNA upstream 21419 2464480 ~ 2470667 (+) True AMCG00002779
AMCG00002780 mRNA upstream 32249 2450190 ~ 2459837 (+) True AMCG00002780
AMCG00002777 mRNA upstream 51154 2406035 ~ 2440932 (+) True AMCG00002777
AMCG00002776 mRNA upstream 117647 2350049 ~ 2374439 (+) True AMCG00002776
AMCG00002786 mRNA downstream 107169 2601763 ~ 2603607 (+) True AMCG00002786
AMCG00002789 mRNA downstream 128045 2622639 ~ 2623681 (+) True AMCG00002789
AMCG00002788 mRNA downstream 131389 2625983 ~ 2633638 (+) True AMCG00002788
AMCG00002787 mRNA downstream 161436 2656030 ~ 2660008 (+) True AMCG00002787
AMCG00002793 mRNA downstream 199932 2694526 ~ 2704574 (+) True AMCG00002793
TU174215 other upstream 1081998 1407046 ~ 1410088 (+) False AMCG00002762
TU174214 other upstream 1089657 1401289 ~ 1402429 (+) True G138506
TU174182 other upstream 1394611 1095939 ~ 1097475 (+) True G138476
TU174180 other upstream 1399134 1089278 ~ 1092952 (+) True AMCG00002757
TU174083 other upstream 1561488 926469 ~ 930598 (+) True AMCG00002748
TU174568 other downstream 612864 3107458 ~ 3116081 (+) True G138790
TU174694 other downstream 934095 3428689 ~ 3596108 (+) True G138888
TU174764 other downstream 1534930 4029524 ~ 4029924 (+) True G138941
TU175054 other downstream 2602137 5096731 ~ 5098744 (+) True G139176
TU175429 other downstream 3653154 6147748 ~ 6153120 (+) True G139492

Expression Profile