RNA id: AMCG00002785


Basic Information

Item Value
RNA id AMCG00002785
length 4378
RNA type mRNA
GC content 0.61
exon number 24
gene id AMCG00002785
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2480058 ~ 2491883 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACGCTCAGTGTGCGGGTTTGCGCAGCGGTTATGGGTCGTGCGAGTTAAAGTTATCAATAACGTTTATTGCATTAACTCAGTGTGCGGCCTACTCTTCGTATGGAGAGATTAGAAAACACCGCGTTGCTTTAGTGCACCTCCAGAAGTGTTacttattataaagtattattataaaGTTGTTATAAGTCATACTGTGCATTTCCGAGAAGCAGAGCCCGTCCGCCTGATCTGACGGCCCGGCCGGTGCTGCCCAGTCCACAGGCCGGGGTGGGGACCCGCAGCAGCCCATGACGCGTCCCCGTGAGACGGTGGCCCAGCCGGGGAAAGCTCTGGAAATCAGTCCGCAGAGGCGGCGCCAATGAGTGGGGAGAGGAGCGCCGAGCGCCCCGGGTCTCCGGGACCGGCCAGCGGGGACAGGGGGGACAGCAAGGGGCAGGACAGTAAGGAGGACAGCAGACAGGAGCTGGCGATGTGTCTGGGCATCAATGAGGTGAAGAGCCGCGCGGTGGTGAAGTACTCCGCCGCCCCCCCGCCCGCCACCTACGCGCTGCTCCAGGAGAAGACCGACCTGAAGCTGCCGCCCGCCAACTGGCTCCGCGAGAGCACCCAGCTGGGCCCGGCCGGCACCACCGTGCTGGGCTCCAGCAGCAAGAGCAAGCCCTTCTCCAGCTTCGGCATGGCGTACGACTTCATCGACTCCATTGGGGACGACGTGGACGTTGTGTCCGATTCCGAGAACATTAAGAAGCTGCTGAAGATCCCCTACAGTAAGTCTCACGTCAGCATGGCGGTGCACCGCGTGGGACGCACACTGCTGCTGGACGAGCTGGACATCCAGGAGCTCTTCATGAGGTCTTCTCAGACGGGCGACTGGACCTGGCTAAAGGAGTTCTATCAGAGGCTGGTGGATCAGAAGTGGCAGAGGAAAAAGAAGAGCAAGGAGCAGTGGTACCAACGGGCGATCCTGTCCAAGTTTCTGTACTACAGCATCAACGGCGACGGGGCAGCGGAGCCGGTGTCGAACGATTTGGACGAGGCCTCGCGCTCTGGGGAGGAGGAGCCGGGAGCCGGGGAGCTGGGCCCATCATGGCCCGCCACCTTCGCCAGCCCTGCCTCCGAGCCAGAGGACCCCGAGGCAGACAAAGAGGACAGCGTTCCTCTGGAGTTCGCTCTGGGACACGTGGACTCGTCCCTGAAGGAACAGAACCTCCCCACGCTGGACAACAACAAGCCAATAAACGTCCTGACGGGAATCGATTACTGGCTGGACAACCTCATGTGCAACGTGCCTGAACTGGTGATGTGCTTCCACGTCAACGGCATTGTGCAGAAATACGAGATGATCAAGACGGAAGACATCCCAGACCTGGAGAACTCAAATTTCTCCACCCGGGTCGTGAAGGACATCGCCCAGAACATCCTGTCCTTCCTCAAGTCCAACTGTACCAAAGAGGGCCACACCTACTGGCTGTTCAAAGCCAGCGGCAGCGACATCGTCAAGCTGTACGACCTGACCACCCTGTGTGAGGAGGCGGCCGAGGAGAAGTGCCAGAACCCCTTCACTCTGCCGGTGGCCGTGCTGCTGTACAAggTGGCCAGCAAcatgatgatgaagaagaacCAGAACCGGAAGCACTACGGCACCATCCGGACACTGCTGCTGAACTGCGTTAAGCTGCTGGACCACGATCGACACCCTCAGATCATCGCCTCGGCCAACTACATGCTGTCGGAGCTGTTCCAGCTGGACGAGCCCGTGGAGGGCGGCGAGGAGGCGCTGCGGGGGGGTGGCTCGGAGGACAGCTACagcgaggaggaggacgaggaggaggaggagctgccCGAGGACAGCGACGAGAACGGCTCCTACAGCACCAGCTCCGACCCGCCCGACGACAGCAAGGCGGTGGCCATCATCCGCTCCGTGGGGGAGCTGTCCGTCCCCGAGAAGTACAAGTCCACCCACCAGATCAGGCCCAGCTACGTGTTCCCGGTTTCCCCCGACAAAGAGGAGCGCTGCCGCCACGTGCTGAGCTACGTCCTGAAGGGCCTGAAAGCAGTGGACAGCAGCATCAAGAAGGAGAGCGACCTCCCAGCTGCCGACCCCAACACTCCCATCCCCCTGAAGTACGAGGAGGGCAGCCAGAGCGCCGGGCCGAGCACCGTGGAGAAGGACATGGCGCTCTTCCTGGACAGGGCAGCCCCCTCTCGGGAGGACTTCAAACACCCGACGCGCTCAGGGATGATCCCGGGCTCCTGGCAGCACCGCATGAAGCTGCAGCTCTTCCTCAAGGCCTCCCGGGCCTACTACGTCCTGTCCGACGCTGCCACCAACCTGCTGAAGTACGGCCGGGCCCTGCGGTACATCAAGCTGGCCCTGCAGTGCCACGACGCCTACTGTGCGGTGAGCCCCGGCCTGCACCCCGAGGTGCTGCTCTTCCACAGCCAGTGCCTGGCGCTGTGCGGCGACATCCAGCTGATGCTCGCCCAGAACGCCAGCAACCGCGCCGCCTACCTGGAGGAGTACAGCTACCAGACGCGCGAGGACCAGGAGATCCTGCACTGCCTGCACCGCGAGTCCAGCTGCCAGGCCTTCAACCTGGCCACGGACCTGGCCACGGACCCCGAGTACCAGCTGACCGTCAGCTGTAAGTGCTATGAGGCGGCGCACGAGCTGCTGACCTCGGGGGACCTGAAGGAGCAGAGCCCGGAGCAGCTGGCGCAGGTGCTGAAGAGACTGGGCAACATCCGCAACGAGATGGGCGTCTTCTACATGAACCAAGCGGCCGCTGTGCAGACCGAGAACACAGTGACCCGCGCCGTGTCGGCGGCCGAGCAGGAGCTGTGGAAGAAGAGCTTCTCGTGCTTTGAGAAGGGCATGAAGGACTTCGAGGCCATCGGTGACGCCACCAACACCGCACTGCTGCTGTGCAACACAGGCCGGCTGATGCGCATCTGCGCCCAGGCCCACTGCGCCGTGACCTCCGACCTCCGCCGCGGGGAGTTCTCGCCCGAGGAGGCGCTCTACTACAATAAGGCCATCGACTACTACCTCCGGGCCATGAAGTCGCTGGTCAGGAGGGAGAGCCACGCCGTGGTGTGGGACTCGGTCAACTGGGAGCTGTCCACCACCTACTTCACCCTGGCCACCCTGCAGCAGGACTACGCGCCTCTGTCCAGGAAGGCGCAGGAGCAGATCGAGAGGGAAGTGACCGAGGCCATGGTGAAATCTCTGAAGTACTGTGACCTGCACACCGAGTCGGCCCGGCAGCCCCTGTACCAGTACCGGGCCGCCACCATCCATCACCGGCTGGCCTCCATGTACCACAGCTGCTTCAGGAACCAGGTGGGGGACGAGCACCTGAGGAAGCAGCACCGCGGTCTGGCCGAGCTGCACTACAGCAAGGCTCTCATCCACAGAGAGCTCCTGGAGGAGCAGAGCCAGGTGGACCCTCCGGACCGCGGCACCGAGGGAACCGGCTCCCCAGACCCCGCCGCCTCCTCGGGCCTCAACACCCAGGAGGTGCAGAGGCTCGTCGCCGTGTTCGAGCCCAGCTTCTCCttcctgctgctgcagctggtcAAGCTGACGACGGCCACCAAGCGCAAACCCAGCGGTGCGCACGAGGAGGAGCTGGTGAAGACGTACAAGCAGCTGTACTCGACGCTGCTGCGCGCGGACAAGGCGGCGCCGCTGCCCGGCAGAGTGGAGCTCATCCTGTCCCTGCTGGGCCAGCTGGGCCCCGGGACGAGCGGTGGGGACAGCGAGGCGTCCTGACAGCCTGGGGCCCACGAGGGGGGACTCTCACTGTACAGCCCGGGACCGGAGAGAGGAGGGAAAGACACGCAAAACGCAAATGGACTTGAATGTGACAAGTGCCTTGCCCACGCTGCTGAAACTGTCGCCTGTTCTAgacttgatttgtgttttgtacaaAGGAAAGCAAATATTCTAACCAGCAATATTTCACCAGGGGtggagctgttttttttattttctatcctCTCTTACtgctatttttttaacatacaagCTGTGTCGGCTACTAGCATGTTCTGGCGTATATAACTCATGTTTTCACACAGCAGTGCACGTTTCTCTTCAAAGCCAGGCGTGTTCAGACTTCAGGACGAGTCGGCGTGTGATGAGTGCAGCGCAGTTGCGTACCGTTGTGTTACGGCTGCTGTTTGTGCAGAAGCTGATGTGCGAGAAGCAAAAATCAGCAAAAGCGATCTGTGAAGAGAAAATGGAAAGTGTGCAATAAGCAGACAGTGATATGTGTGAAGGAATCTTTGGATGTGTTTGGCTGTTGGaggtattgtgtgtgtgtgtgtgtgcgtttccaCCACTCACTCAAATAAaggtctttttttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174334 lncRNA downstream 395961 2083898 ~ 2084097 (-) True G138594
TU174285 lncRNA downstream 546063 1933360 ~ 1933995 (-) True G138559
TU174258 lncRNA downstream 962005 1489562 ~ 1518053 (-) True G138535
TU174128 lncRNA downstream 1581641 895012 ~ 898417 (-) True G138430
TU174435 lncRNA upstream 10230 2502113 ~ 2502314 (-) True G138678
TU174481 lncRNA upstream 199547 2691430 ~ 2691869 (-) True G138720
TU174502 lncRNA upstream 215986 2707869 ~ 2708075 (-) True G138737
TU174503 lncRNA upstream 222494 2714377 ~ 2714688 (-) True G138738
TU174507 lncRNA upstream 228529 2720412 ~ 2720704 (-) True G138742
AMCG00002781 mRNA downstream 13363 2460051 ~ 2466695 (-) True AMCG00002781
AMCG00002783 mRNA downstream 29917 2445929 ~ 2450141 (-) True AMCG00002783
AMCG00002782 mRNA downstream 35469 2441871 ~ 2444589 (-) True AMCG00002782
AMCG00002775 mRNA downstream 150867 2289108 ~ 2329191 (-) True AMCG00002775
AMCG00002772 mRNA downstream 311479 2127630 ~ 2168579 (-) True AMCG00002772
AMCG00002790 mRNA upstream 143408 2635291 ~ 2654410 (-) True AMCG00002790
AMCG00002791 mRNA upstream 169023 2660906 ~ 2671073 (-) True AMCG00002791
AMCG00002799 mRNA upstream 256229 2748112 ~ 2749307 (-) True AMCG00002799
AMCG00002797 mRNA upstream 258906 2750789 ~ 2751466 (-) True AMCG00002797
AMCG00002798 mRNA upstream 266991 2758874 ~ 2759867 (-) True AMCG00002798
TU174137 other downstream 1554660 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 1555824 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 1555824 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 1658467 812745 ~ 821591 (-) False AMCG00002743
TU174098 other downstream 1669053 808155 ~ 811005 (-) False AMCG00002743
TU174506 other upstream 226325 2718208 ~ 2719419 (-) True G138741
TU174734 other upstream 1445881 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 1509767 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 4570590 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 4856928 7348811 ~ 7352821 (-) True AMCG00002945

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022455 False 4627 mRNA 0.48 25 NC_007128.7 8754020 ~ 8792072 (+)
grasscarp (Ctenopharyngodon idella) CI01000310_03054431_03066827.mRNA True 4282 mRNA 0.48 25 CI01000310 3054431 ~ 3067384 (+)