RNA id: AMCG00002792


Basic Information

Item Value
RNA id AMCG00002792
length 2430
RNA type mRNA
GC content 0.65
exon number 4
gene id AMCG00002792
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2706965 ~ 2723778 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCACCACAGCGTTTACTCCAGTCATCAAACCACAGCCTTACTACAAAGAAGTGTGTTTGCTGGGGAGCAAAACGGCTGCGGGAATAAACGCGTGTTTTGCTCTCCgcggagccggagcggagccGGAGCGGACGGGCCAAGTGAGCTGCGGTGGGCTGCTCTGCTGCAGACGCGCAACACGCAACGCGATACACGTAGGAACCGGCCGGGCGGCTCCCGCACAGTGCGTGACACCCTCGGGCCGGTACGTGAGCTCCGCCCCGCCTGTGCGGTACTGTGACGGCGTGCGGCTCCGCTCTGTGTTGCGCTGCGGCCGCTCGGCGAGGCGGTGTGTTGCAGCGGCTCCGTGTTGTGCCCGGCGTTGTGCGCTGTGCCAGGCTGGCGGCTCTGCTCCGCGCTGGGCTTGTGCTGTGAGAAGAGCCGAGGATGCCCCGGGTTTGAGGGGAAGCAGCCACTGATCCGCAGGACTGACAACATGCTCCTTCCCGGGCAGGAGGAGGTGAGGGGACCATCCCAGTAGAGCCCACGGGACCACAGACCGTTGACGCCACGGGCCGCCCGTAAAGATGGCCTCCGGGAGCCTCCGCCTGCACCGCAACGCACCGGGCCAAGGATGTGCCTTACCATGGTGATCATTCACACGAAAACACTGGAAAGGAAGAAGGCCGTCGATTATGTAACGTCCAAGGCGACCGACTCGGAGCTGAGCGACGGGTGGCGGGACCGGGGCCGGAGCTGTGCCTTCCAGAGGGAGCCCGGCCGTGCCAGCCTGGAGAGCCTGTGGGACGTCCTGCCCGAGGCGTGCCAGGGGCGTGGGGGGTGGACCCGGGAGCCCGGCGCTGCCAGCACCATCACCAGCCTGATCCGGGACCTGAGCCTGAGCGACGCCAAGGCCGCCCCTCCCGCCGCTCCCCCCAGCAAGCGCCAGTGCTGCTCGCTGTCCCTCTCGGACGAGCCGGGCTCGGGCCGGGTGTGGCGGCCGCAGGGCTCGCGGGTGTGGACGGCTGTGGAGAAGCGGCGCTGCCACAGCGGGGGCAGCGTGACGCGGGGACCCTCCTCGGGTGGCGGGCTGGCAGGGTATCCCATCATGCAGCGCAGCTCCAGCTTCAGCCTGCCGGCCCGCTCCAACGCCCTGCCCCTGAACTTTGAGCTGCCCTGCCTCGCCCAGCGCCTGCCCGGCCTGCCCTTCACTGGCTTCcagccctccccctcctccccctcctcccacaGAGCGGGCCTGGACCCGTCTGACCCGGCGcggcccctctccctctcccacgaACAGATCTGCCCCCTCGGGCAGCGCCGGCCCTCCGCCAGCAGCTCCCCCGACTCCACGCCCGAGCTGGGCCGCCGCGCCAGGCCCGGGGGTCTGGCCAGGAGCCGCTCGCAGCCCTGCGTCCTGAACGACAAGAAGATCGGCATGAAGCGCAGGAGGCCCGAGGACGCCCAGGAGAAGAGGCCCTCCCTGGACCTGGCCAAGATGACTCAGAAACTGCAGAATTTCCACAGCCTCAGTGGCCCGGGCATCACGGCGGCCGACTTGCACCAAGCCCTGTCCCCCCGCGGCAGCCCCGGCCAGTGTGCGGGCGCCTCTGCCCCTGGGGGGGACCCGGATATGGAGCCGCGGCAGAACACTGACGAAGAGGGCAGGGAAAACGGGGAATACTCGTCCAACGAGGAGCTGGACTTCGAAGCCACCGGGGGCGGGGGCTCGAAGAGGGAAGGTGTGAACGGGAAGCAGGAGTGCGGGGCGAGCTGGCAAGAGCCATGTGTCACTGGGAAGGATGTCTTCCGACTGGGCGAGGAGCTGGACATTGAGCAGATTGAGAGGAACTGAACAGGGGCTCGATCCCTGGAGCTCCGGGCGGAGTGTGTGACCAGGAGGGTGTGGTTCTCCAGCAAATGGACACAGGAAGGCCGGGCCTCGCTGGGCCGGATCGGAAAAGCCACCCCAGTCGGGTCAGGTCGATGTCCGGATGCTCTATTTGGCCCGAGCGCTCGCTCAGTTGTCCTGCTTGATTGCCCTCTGTCTGTGGGGCGGGAAGGGGCAGAGTCCCGGGGGCTGGTCTCCTGCTGGGGTTGGGGACTCGTCGATGACATTAACGTGACGGGGGCCCTCGGTGACGCTTCCTCCCCATGTGCTGGAGCCCGTGATCTCCCAAAGGCAGAAGCATTGCTGTCAAAACATGGCCGATTTGATTGGCATTTCCCCCCCTCCGTGCCGCACACAGCCACACTCACCCGGCTTCACAACTTGCACCATAACCAGGTCGTCAAACGCCACAAGTGCTCGATTTGTACCCAGAGCTGTCCtctatatttttctgaaaaggattctatataattttgtttaaaaaatctTTGAATGATTAGTTTTTAACTGCAAATCCAGAAAGAAagcattataatatttttatacaaataaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174480 lncRNA upstream 15125 2691429 ~ 2691840 (+) True G138719
TU174473 lncRNA upstream 39427 2665458 ~ 2667538 (+) True G138712
TU174384 lncRNA upstream 243329 2461638 ~ 2463636 (+) True G138634
TU174333 lncRNA upstream 646361 2060377 ~ 2060604 (+) True G138593
TU174289 lncRNA upstream 767840 1938147 ~ 1939125 (+) True G138562
TU174604 lncRNA downstream 449129 3172907 ~ 3177610 (+) True G138816
TU174676 lncRNA downstream 652468 3376246 ~ 3378027 (+) True G138871
TU174711 lncRNA downstream 1003719 3727497 ~ 3727731 (+) True G138903
TU174713 lncRNA downstream 1201391 3925169 ~ 3928654 (+) True G138905
TU174716 lncRNA downstream 1201391 3925169 ~ 3928619 (+) False G138905
AMCG00002793 mRNA upstream 2391 2694526 ~ 2704574 (+) True AMCG00002793
AMCG00002787 mRNA upstream 46957 2656030 ~ 2660008 (+) True AMCG00002787
AMCG00002788 mRNA upstream 73327 2625983 ~ 2633638 (+) True AMCG00002788
AMCG00002789 mRNA upstream 83284 2622639 ~ 2623681 (+) True AMCG00002789
AMCG00002786 mRNA upstream 103358 2601763 ~ 2603607 (+) True AMCG00002786
AMCG00002795 mRNA downstream 38814 2762592 ~ 2764651 (+) True AMCG00002795
AMCG00002796 mRNA downstream 42980 2766758 ~ 2766973 (+) True AMCG00002796
AMCG00002794 mRNA downstream 44673 2768451 ~ 2776607 (+) True AMCG00002794
AMCG00002800 mRNA downstream 141665 2865443 ~ 2885096 (+) True AMCG00002800
AMCG00002801 mRNA downstream 186175 2909953 ~ 2956770 (+) True AMCG00002801
TU174426 other upstream 212371 2492086 ~ 2494594 (+) True AMCG00002784
TU174215 other upstream 1296877 1407046 ~ 1410088 (+) False AMCG00002762
TU174214 other upstream 1304536 1401289 ~ 1402429 (+) True G138506
TU174182 other upstream 1609490 1095939 ~ 1097475 (+) True G138476
TU174180 other upstream 1614013 1089278 ~ 1092952 (+) True AMCG00002757
TU174568 other downstream 383680 3107458 ~ 3116081 (+) True G138790
TU174694 other downstream 704911 3428689 ~ 3596108 (+) True G138888
TU174764 other downstream 1305746 4029524 ~ 4029924 (+) True G138941
TU175054 other downstream 2372953 5096731 ~ 5098744 (+) True G139176
TU175429 other downstream 3423970 6147748 ~ 6153120 (+) True G139492

Expression Profile