RNA id: AMCG00002796


Basic Information

Item Value
RNA id AMCG00002796
length 216
RNA type mRNA
GC content 0.68
exon number 1
gene id AMCG00002796
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2766758 ~ 2766973 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCGCAGTTTGCGGGCCGGGCAGACCCGCACACAGCGCCGCCTCTCTGTCCTGCGTGCTGCGCCTGCGCACTGACGTCGAGCAGCGGCTGAGCTTCACTGGAGTCCGCAGCGCCGGGACCGCACGCACAGCAGCTCCGCACCGACACAGGTACGAACCGGGACACCGAGGGAGGGCTAATGACGGGATCGCTGCAGTCCGTGTGCAAAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174480 lncRNA upstream 74918 2691429 ~ 2691840 (+) True G138719
TU174473 lncRNA upstream 99220 2665458 ~ 2667538 (+) True G138712
TU174384 lncRNA upstream 303122 2461638 ~ 2463636 (+) True G138634
TU174333 lncRNA upstream 706154 2060377 ~ 2060604 (+) True G138593
TU174289 lncRNA upstream 827633 1938147 ~ 1939125 (+) True G138562
TU174604 lncRNA downstream 405934 3172907 ~ 3177610 (+) True G138816
TU174676 lncRNA downstream 609273 3376246 ~ 3378027 (+) True G138871
TU174711 lncRNA downstream 960524 3727497 ~ 3727731 (+) True G138903
TU174713 lncRNA downstream 1158196 3925169 ~ 3928654 (+) True G138905
TU174716 lncRNA downstream 1158196 3925169 ~ 3928619 (+) False G138905
AMCG00002795 mRNA upstream 2107 2762592 ~ 2764651 (+) True AMCG00002795
AMCG00002792 mRNA upstream 42980 2706965 ~ 2723778 (+) True AMCG00002792
AMCG00002793 mRNA upstream 62184 2694526 ~ 2704574 (+) True AMCG00002793
AMCG00002787 mRNA upstream 106750 2656030 ~ 2660008 (+) True AMCG00002787
AMCG00002788 mRNA upstream 133120 2625983 ~ 2633638 (+) True AMCG00002788
AMCG00002794 mRNA downstream 1478 2768451 ~ 2776607 (+) True AMCG00002794
AMCG00002800 mRNA downstream 98470 2865443 ~ 2885096 (+) True AMCG00002800
AMCG00002801 mRNA downstream 142980 2909953 ~ 2956770 (+) True AMCG00002801
AMCG00002803 mRNA downstream 280503 3047476 ~ 3051879 (+) True AMCG00002803
AMCG00002804 mRNA downstream 403370 3170343 ~ 3172461 (+) True AMCG00002804
TU174426 other upstream 272164 2492086 ~ 2494594 (+) True AMCG00002784
TU174215 other upstream 1356670 1407046 ~ 1410088 (+) False AMCG00002762
TU174214 other upstream 1364329 1401289 ~ 1402429 (+) True G138506
TU174182 other upstream 1669283 1095939 ~ 1097475 (+) True G138476
TU174180 other upstream 1673806 1089278 ~ 1092952 (+) True AMCG00002757
TU174568 other downstream 340485 3107458 ~ 3116081 (+) True G138790
TU174694 other downstream 661716 3428689 ~ 3596108 (+) True G138888
TU174764 other downstream 1262551 4029524 ~ 4029924 (+) True G138941
TU175054 other downstream 2329758 5096731 ~ 5098744 (+) True G139176
TU175429 other downstream 3380775 6147748 ~ 6153120 (+) True G139492

Expression Profile