RNA id: AMCG00002799


Basic Information

Item Value
RNA id AMCG00002799
length 522
RNA type mRNA
GC content 0.64
exon number 3
gene id AMCG00002799
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2748112 ~ 2749307 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgAGACTCACTGACGAGAGCGAGTCTGGTGTGGAGGGGCCGTGGCTCTCGTTCTGCCCtgatccccccccacccacaccgctgtgtgtttttcagtttgcttGTGACGTGGAGGCCGAGGTGGTGGGGAAGCCGGCCCAGATGTTCTTCAAGAGCGTGTTGGCAGACATGGGCCTGGAGCCGCACGAGCCCCTAATTGTTCTTCTCGCGGCGCGGGCCTGTCCTGTTACCGCGGCGCGGCGCTCCCAGAGGCCCGGCTCCATCTCCGTCTGCCCTCGGTTGGTTCGAATCGCCAAACCCTCTGGATCGCACAGATTGACCGCAACGCCCCGGCGCCAAACGCTTTCTGATGGCGTCCAAACGGGGACGGGCCCGGCTGAGGTGCGTAGTCGGCGGGTGGAAGGGTCCCACTGTGGACTCCCTGCCACCACGGGCGAGTGGCAAAGTCTGTTCTCCATTGACCCAAACACCCTCAGGGGCCTCTTTAACCAGACAAGCCGCCCGGCAGCCCAGTCCTGGTGA

Function

GO: NA

KEGG:

id description
ko03015 mRNA surveillance pathway
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174507 lncRNA downstream 27408 2720412 ~ 2720704 (-) True G138742
TU174503 lncRNA downstream 33424 2714377 ~ 2714688 (-) True G138738
TU174502 lncRNA downstream 40037 2707869 ~ 2708075 (-) True G138737
TU174481 lncRNA downstream 56243 2691430 ~ 2691869 (-) True G138720
TU174435 lncRNA downstream 245798 2502113 ~ 2502314 (-) True G138678
TU174584 lncRNA upstream 311254 3060561 ~ 3113082 (-) True G138799
TU174679 lncRNA upstream 626941 3376248 ~ 3378038 (-) True G138873
TU174717 lncRNA upstream 1175860 3925167 ~ 3928618 (-) True G138906
TU174779 lncRNA upstream 1326308 4075615 ~ 4076838 (-) True G138948
TU174869 lncRNA upstream 1706485 4455792 ~ 4456002 (-) True G139024
AMCG00002791 mRNA downstream 77039 2660906 ~ 2671073 (-) True AMCG00002791
AMCG00002790 mRNA downstream 93702 2635291 ~ 2654410 (-) True AMCG00002790
AMCG00002785 mRNA downstream 256229 2480058 ~ 2491883 (-) True AMCG00002785
AMCG00002781 mRNA downstream 281417 2460051 ~ 2466695 (-) True AMCG00002781
AMCG00002783 mRNA downstream 297971 2445929 ~ 2450141 (-) True AMCG00002783
AMCG00002797 mRNA upstream 1482 2750789 ~ 2751466 (-) True AMCG00002797
AMCG00002798 mRNA upstream 9567 2758874 ~ 2759867 (-) True AMCG00002798
AMCG00002802 mRNA upstream 216687 2965994 ~ 2973796 (-) True AMCG00002802
AMCG00002807 mRNA upstream 366554 3115861 ~ 3121097 (-) True AMCG00002807
AMCG00002809 mRNA upstream 375617 3124924 ~ 3133886 (-) True AMCG00002809
TU174506 other downstream 28693 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 1822714 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 1823878 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 1823878 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 1926521 812745 ~ 821591 (-) False AMCG00002743
TU174734 other upstream 1188457 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 1252343 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 4313166 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 4599504 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 5181950 7931257 ~ 7938241 (-) False AMCG00002970

Expression Profile