RNA id: AMCG00002802


Basic Information

Item Value
RNA id AMCG00002802
length 1014
RNA type mRNA
GC content 0.57
exon number 3
gene id AMCG00002802
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2965994 ~ 2973796 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACACGGCGGACGTGTCCGTGTCCTTCCTGGTGGCGCTCATCATGGTCGTGGCGCTGCTGTCCAACGTGCTGGTGCTGATCTGCTTCCTCTACAGCCCGGAGATCCGCAAACAGGTGCCGGGGCTGTTCATCCTGAACCTGACCTTCTGCAACCTGCTGATGACCGTGTCCAACATGCCCCTGACTCTGGTGGGGCTCATCAACAAGGGGCACCCCGGCGGCGAGGGCTTCTGTCACATCGTGGGGTTTTTGGACACCTTCCTGACGACCAACGCCATGCTGAGCATGGCAGCTCTGAGCATCGACAGGTGGATTGCCGTGGTTTTCCCCCTGAGCTACCATTCAAAGATGCGCCACCGGGACGCCGCGCTGGTGCTGGGCTACACGTGGGTGCACTCGCTGTCCTTCTCCACGGTGGCGGCGTGTCTCTCCTGGGTGGGCTACCATCACCTGTACGCCTCCTGTTCTCTGTGCAACGCCAGGGCCAGCGGGAGCCGGACCCAGTTCGTGATCTTTACCGTGCTTTTCCACTCCCTCACCTTCCTGTTGTCCTTGGTAGTGCTGTGCGTTACCTACCTGAAAGTGCTCAGAGTGGCGCGGTCCCACTGCAGGAGGATAGACATCATTACCATGCAGACCTTGGTGCTACTTGTGGACATTCACCCAAGTGTTCGACAGCGTTGCCTTGAGGAGCAGAAGAAACGGAGACAGAGAGCCACCAAAAAGATCAGCACCTTCATCGGCACGTTTGTGCTCTGCTTCGCACCGTATGTCATAACGAGGCTAGTGGAGCTGTTCCCTGCAGTGCCTATCAATCCTCACTGGGGAGTTGTATCCAAGTGCTTGGCTTACAGTAAAGCGGCCTGCGATCCCTTCGTGTACTCTCTGCTCCGACACCAGTACAGGAAGACGTGCAGTGATATCATCAACCGGGTCCTGAAGAGGAGCTCTCTGAACTCTGAACTGAGGGCAGAGAATGGGAGAAACAACATCATACAAACGGCGGAGTGA

Function

GO: NA

KEGG:

id description
K08411 GPR26; G protein-coupled receptor 26

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174507 lncRNA downstream 245290 2720412 ~ 2720704 (-) True G138742
TU174503 lncRNA downstream 251306 2714377 ~ 2714688 (-) True G138738
TU174502 lncRNA downstream 257919 2707869 ~ 2708075 (-) True G138737
TU174481 lncRNA downstream 274125 2691430 ~ 2691869 (-) True G138720
TU174435 lncRNA downstream 463680 2502113 ~ 2502314 (-) True G138678
TU174584 lncRNA upstream 86765 3060561 ~ 3113082 (-) True G138799
TU174679 lncRNA upstream 402452 3376248 ~ 3378038 (-) True G138873
TU174717 lncRNA upstream 951371 3925167 ~ 3928618 (-) True G138906
TU174779 lncRNA upstream 1101819 4075615 ~ 4076838 (-) True G138948
TU174869 lncRNA upstream 1481996 4455792 ~ 4456002 (-) True G139024
AMCG00002798 mRNA downstream 206127 2758874 ~ 2759867 (-) True AMCG00002798
AMCG00002797 mRNA downstream 214528 2750789 ~ 2751466 (-) True AMCG00002797
AMCG00002799 mRNA downstream 216687 2748112 ~ 2749307 (-) True AMCG00002799
AMCG00002791 mRNA downstream 294921 2660906 ~ 2671073 (-) True AMCG00002791
AMCG00002790 mRNA downstream 311584 2635291 ~ 2654410 (-) True AMCG00002790
AMCG00002807 mRNA upstream 142065 3115861 ~ 3121097 (-) True AMCG00002807
AMCG00002809 mRNA upstream 151128 3124924 ~ 3133886 (-) True AMCG00002809
AMCG00002808 mRNA upstream 165152 3138948 ~ 3140649 (-) True AMCG00002808
AMCG00002806 mRNA upstream 189005 3162801 ~ 3168504 (-) True AMCG00002806
AMCG00002805 mRNA upstream 195370 3169166 ~ 3180564 (-) True AMCG00002805
TU174506 other downstream 246575 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 2040596 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 2041760 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 2041760 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 2144403 812745 ~ 821591 (-) False AMCG00002743
TU174734 other upstream 963968 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 1027854 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 4088677 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 4375015 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 4957461 7931257 ~ 7938241 (-) False AMCG00002970

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023805 True 1674 mRNA 0.51 3 NC_007128.7 21607239 ~ 21617618 (-)
grasscarp (Ctenopharyngodon idella) CI01000312_00720528_00726895.mRNA True 2694 mRNA 0.42 3 CI01000312 719177 ~ 727188 (-)