RNA id: AMCG00002810


Basic Information

Item Value
RNA id AMCG00002810
length 2175
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00002810
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3195140 ~ 3198501 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tacatctatatataaaaatataaggctctatatatttatagtagTTTCGTTTATTTGTCGTTTGTCAATATATGCTATGCAAAAATGCTACTTCTGTTGTCATGCGGGCTTTAGGACAGTCCTCCGTCGCTTTGGGTCCTTCTACAGGTCCGTCGCTGGAATGACGTGTCAGCAAATCTGGGAGAGCTGTCAGTTGGTTTGCATGGGGACGCGCACGTTTAAATTACacaacttaaatatatatatgtattactcTTCTTATACGtgtatgttttaagaaaatgaacTCATTTTCGCATAGGGTTGTTAATATAGCCTCCGAGAACCACTGCCCGAGGTCTTATGTGATATGTGCATGGAGACATCGCGTTTGAAATGAGTGTTTATCATCAATATCAGTAGTATCCGACTCTATCGAGGCTCTGCGGCTCTGGGGCTCTGACGTGGGCTCGGGTTATGGTCACAGACGCCTGGCTGTCACAATGGAGCGGCGGTGTTTGATCTCCAGTGCGGACGGCCGGGTCTCTGGTCATGTGACCTGGGCCAGCACTTCTCCGGACCGGCAGCTGGGGGACGTGCTGGTGCTCCGCAAACACGCAGCCGGCAGCTCCGAGGACCCGGGCGAGGCTCTACCTGCACCCGTGTTCCTGGAGCAGACCCCGGGAGATGGCGCCGGCCCCTGCACCCTGACCCTGCAGTGTGGCCCCCACTCTGGCGCCGCCATCTCCTCCCTGCTGGTGGTGAGCGAGGCCCGGACCATGGAGGTGTACTGCGACACCGAGTACTGCGGTACCTGCCGAGGGGAGCGTGTGGGCGGCCTGCGGGCCAACGGTGTCTCTGAAAACATTGCCCTGTATAAGAAAGAGCTGACGTTAGACTGTCCTGCTACATCGTGTGAAGTAAAGCTGCTGTCTCTTGGCGGGAGGAGCAGAGTGGGCATCGGTCAGATGGTGTTGGGACTGAAGCCCGCGGGTCCAGCGGCGGTTTCGCCCAGCGCGGGGGGCAGCGTGGACCTGCAGGCGaacAAGCAGGATGTCCTCGGGGGGTTTCTGCCGATGCTCCTGGGTGGTGGGGGGTCGCTGGCGGCTCTGGTGAGAGGAGGCATCGCGGCGCACACCGCAGGAGGAGTCGGGCTCCCCGCTGGGGGAGATGGGCCTCAGGGCACAGCCATCCCCAGCCCCGCAGTCCCATCGCAGTCAGCCAAATCCTGCCCCTCCGGTCAGCCCTCTGGACACGGCCTGACGGACACGGACAGGACGTCCTTCCGGGGGCAGGGCAGCCTGGGCCCCGAGACGCTGCCCCTCCTGCGAGGCATGTGTGGTGCGGTGACACGGCTGCGCGGCGAGACCGGGGCCCCTGTGGAGAGACCGCTGTCGGAGCCACCgcaggagaggccATGCTGCCGGGCCCTGGAGGAGGCGGTGGAGCGCCGTCTGGAGGCGATGGAGAGGAGGCTGATGGAGCACATCGACCTGCGCCTCTCCGCCCTGCAGCGAGGCCTGGAGAGCACGGTGATGGCGGTCCTGGCCCCGGGGACGCCCCCTCTCGCCCCACACAACGGCCCTCTGCACTGCCGCTGCCGGGAGGAGCTGCCCAACGGAGACGCCTGAGCGCAGACACCACAGGGTGCCCCGGCACTGCATCACAGCTGTAAACGCTCGGGCACAACGGTTCTATAGAGGGAACGCTGAGAAATGTGTAGGTTTGGAAGTACTTTTGCGTTACTTTAAAGGCACTGAAGGCAGATGTCCAAAAGACTGTGACTGTGACTCACCACGCCTTGTTATTTTCCCCTCGGTTGTCGTTTTTGTTTTCGGACTATTCTGTTCTTGGGAGGTTATAGAAAATACTGCATTTGATCCGTGCAAAAGGGACTGGCTGATAATACAAACCGCACAGAGGGCTGCAGTAATCTCTCAAATACTGTTCTTCATGCTTtcaaagtatatttatatatatttgttttcattgacttattttgttttattttcttgcctaCGATGTATGTTTCTACCCCAGAGGGCGCTGTGTCGGGTGTCAGGTGGTTTAAGTGTCTGTCTTGAGTTGCTTCTCACTGTGACACCCTGACTGGTGACCTGTAATCCCTACAGTGTGTAACATTGTTGCTCACTGCTGTCTGCAAGCGGCAGATTCGGTTGAAAAGGGAGTTCTCAT

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174604 lncRNA upstream 17530 3172907 ~ 3177610 (+) True G138816
TU174480 lncRNA upstream 503300 2691429 ~ 2691840 (+) True G138719
TU174473 lncRNA upstream 527602 2665458 ~ 2667538 (+) True G138712
TU174384 lncRNA upstream 731504 2461638 ~ 2463636 (+) True G138634
TU174333 lncRNA upstream 1134536 2060377 ~ 2060604 (+) True G138593
TU174676 lncRNA downstream 177745 3376246 ~ 3378027 (+) True G138871
TU174711 lncRNA downstream 528996 3727497 ~ 3727731 (+) True G138903
TU174713 lncRNA downstream 726668 3925169 ~ 3928654 (+) True G138905
TU174716 lncRNA downstream 726668 3925169 ~ 3928619 (+) False G138905
TU174744 lncRNA downstream 791423 3989924 ~ 3990348 (+) True G138927
AMCG00002804 mRNA upstream 22679 3170343 ~ 3172461 (+) True AMCG00002804
AMCG00002803 mRNA upstream 143261 3047476 ~ 3051879 (+) True AMCG00002803
AMCG00002801 mRNA upstream 238370 2909953 ~ 2956770 (+) True AMCG00002801
AMCG00002800 mRNA upstream 310044 2865443 ~ 2885096 (+) True AMCG00002800
AMCG00002794 mRNA upstream 418533 2768451 ~ 2776607 (+) True AMCG00002794
AMCG00002814 mRNA downstream 58545 3257046 ~ 3267033 (+) True AMCG00002814
AMCG00002816 mRNA downstream 149681 3348182 ~ 3348766 (+) True AMCG00002816
AMCG00002815 mRNA downstream 160292 3358793 ~ 3376168 (+) True AMCG00002815
AMCG00002821 mRNA downstream 236642 3435143 ~ 3435592 (+) True AMCG00002821
AMCG00002822 mRNA downstream 362851 3561352 ~ 3562149 (+) True AMCG00002822
TU174568 other upstream 79059 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 700546 2492086 ~ 2494594 (+) True AMCG00002784
TU174215 other upstream 1785052 1407046 ~ 1410088 (+) False AMCG00002762
TU174214 other upstream 1792711 1401289 ~ 1402429 (+) True G138506
TU174182 other upstream 2097665 1095939 ~ 1097475 (+) True G138476
TU174694 other downstream 230188 3428689 ~ 3596108 (+) True G138888
TU174764 other downstream 831023 4029524 ~ 4029924 (+) True G138941
TU175054 other downstream 1898230 5096731 ~ 5098744 (+) True G139176
TU175429 other downstream 2949247 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 3868442 7066943 ~ 7073536 (+) True AMCG00002939

Expression Profile