RNA id: AMCG00002814



Basic Information


Item Value
RNA id AMCG00002814
length 513
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00002814
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3257046 ~ 3267033 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGATGAGGAAATATAAAGACTTCGGTAAAAACCCAGATCCTGCCCAAGGACTAGTTTACCTGTTGGAAAGTCCCGCAGCCGTCCAGCGGGATGCTGAAGATGGCGTAGGAGCCGTTGTTTTGAGGACGGCAGAACGGGTCATTCACACTGACGTCGCTGATGTTGTAGTCCAGTGCGTGCAGGAAGGACAGCTCCAGGCCGACCCTCATGAGGTCACTAGAGCACTCCACCTGCACTGGAGAAGGTCAAACACGCTTGTGAAGTCCTGTGGGGGGTCCCTGGATGTCCCCTCGGGTTGGTTTTCCACCCCAAACTATCCAGAAGTGTACCCTTCCAATTCTTACTGCGTGTGGCACATCACAGTGCCAGCTTTCGAGAGGATAGAACTGGAATTTGACCAGATACAtgTGCAGACCGATCGAACCCCTGCAGGGGCAGAGCTGGGGCCCAGGCCAGGGCAGGAGGAGAGCTTGGTTCAAAATACGAGACACAGAGGAAAGTCAGACAGATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU174604 lncRNA upstream 79436 3172907 ~ 3177610 (+) True G138816
TU174480 lncRNA upstream 565206 2691429 ~ 2691840 (+) True G138719
TU174473 lncRNA upstream 589508 2665458 ~ 2667538 (+) True G138712
TU174384 lncRNA upstream 793410 2461638 ~ 2463636 (+) True G138634
TU174333 lncRNA upstream 1196442 2060377 ~ 2060604 (+) True G138593
TU174676 lncRNA downstream 109213 3376246 ~ 3378027 (+) True G138871
TU174711 lncRNA downstream 460464 3727497 ~ 3727731 (+) True G138903
TU174713 lncRNA downstream 658136 3925169 ~ 3928654 (+) True G138905
TU174716 lncRNA downstream 658136 3925169 ~ 3928619 (+) False G138905
TU174744 lncRNA downstream 722891 3989924 ~ 3990348 (+) True G138927
AMCG00002810 mRNA upstream 58545 3195140 ~ 3198501 (+) True AMCG00002810
AMCG00002804 mRNA upstream 84585 3170343 ~ 3172461 (+) True AMCG00002804
AMCG00002803 mRNA upstream 205167 3047476 ~ 3051879 (+) True AMCG00002803
AMCG00002801 mRNA upstream 300276 2909953 ~ 2956770 (+) True AMCG00002801
AMCG00002800 mRNA upstream 371950 2865443 ~ 2885096 (+) True AMCG00002800
AMCG00002816 mRNA downstream 81149 3348182 ~ 3348766 (+) True AMCG00002816
AMCG00002815 mRNA downstream 91760 3358793 ~ 3376168 (+) True AMCG00002815
AMCG00002821 mRNA downstream 168110 3435143 ~ 3435592 (+) True AMCG00002821
AMCG00002822 mRNA downstream 294319 3561352 ~ 3562149 (+) True AMCG00002822
AMCG00002823 mRNA downstream 410609 3677642 ~ 3681292 (+) True AMCG00002823
TU174568 other upstream 140965 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 762452 2492086 ~ 2494594 (+) True AMCG00002784
TU174215 other upstream 1846958 1407046 ~ 1410088 (+) False AMCG00002762
TU174214 other upstream 1854617 1401289 ~ 1402429 (+) True G138506
TU174182 other upstream 2159571 1095939 ~ 1097475 (+) True G138476
TU174694 other downstream 161656 3428689 ~ 3596108 (+) True G138888
TU174764 other downstream 762491 4029524 ~ 4029924 (+) True G138941
TU175054 other downstream 1829698 5096731 ~ 5098744 (+) True G139176
TU175429 other downstream 2880715 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 3799910 7066943 ~ 7073536 (+) True AMCG00002939

Expression Profile