RNA id: AMCG00002816


Basic Information

Item Value
RNA id AMCG00002816
length 585
RNA type mRNA
GC content 0.65
exon number 1
gene id AMCG00002816
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3348182 ~ 3348766 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACATCAAGATTTGGTAAAACCTACAGTCGGAAGGGAGGGAATGGGAACTCGAAGTTCGACGAGGTCCTGTCCAACAAGAGGGCGACGCTCAGCACCAAATGGGGGGAGACCACCTTCAAGGCACAGCTGGGATCCAAGCGGCCGAACCTCAAGCCCGAGGTGACCGAGCCTCCCAAGAGGCCCAGGCACACGGAGGATGTCAGCTCCGAGGACCCCTTCGGCTTCGACAGCGACGACGACTCCAAGCCCGTCACCTCCCGCAGCGTCCCACAGAGCAAGGTGGCCCCGCCCAAGCCGCAGCCCCCGCCGGCGGCCTCTCCCTCGCCAGAGAAGATGGGCTCGGCGCTGGAGGCCAACAGCTGGGTCAGCCAGCCCGTCAGCGTGGAGGCCGTGGCCCCCAGCCGGACCCCCGCGGCCTTCGACAGTGAACTGAGGGACCGGAGCGCGCACTGGGTACCGGACGATGGCAACAGCAGGGTCTTCGGCAACAGCACCACTGCAGGTAAGAGTTTGGCCTGGCTACGCtgctgtgtggggggggatgctgtgctgctgtgtggatGCCTCGATAGCCTCCCGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174604 lncRNA upstream 170572 3172907 ~ 3177610 (+) True G138816
TU174480 lncRNA upstream 656342 2691429 ~ 2691840 (+) True G138719
TU174473 lncRNA upstream 680644 2665458 ~ 2667538 (+) True G138712
TU174384 lncRNA upstream 884546 2461638 ~ 2463636 (+) True G138634
TU174333 lncRNA upstream 1287578 2060377 ~ 2060604 (+) True G138593
TU174676 lncRNA downstream 27480 3376246 ~ 3378027 (+) True G138871
TU174711 lncRNA downstream 378731 3727497 ~ 3727731 (+) True G138903
TU174713 lncRNA downstream 576403 3925169 ~ 3928654 (+) True G138905
TU174716 lncRNA downstream 576403 3925169 ~ 3928619 (+) False G138905
TU174744 lncRNA downstream 641158 3989924 ~ 3990348 (+) True G138927
AMCG00002814 mRNA upstream 81149 3257046 ~ 3267033 (+) True AMCG00002814
AMCG00002810 mRNA upstream 149681 3195140 ~ 3198501 (+) True AMCG00002810
AMCG00002804 mRNA upstream 175721 3170343 ~ 3172461 (+) True AMCG00002804
AMCG00002803 mRNA upstream 296303 3047476 ~ 3051879 (+) True AMCG00002803
AMCG00002801 mRNA upstream 391412 2909953 ~ 2956770 (+) True AMCG00002801
AMCG00002815 mRNA downstream 10027 3358793 ~ 3376168 (+) True AMCG00002815
AMCG00002821 mRNA downstream 86377 3435143 ~ 3435592 (+) True AMCG00002821
AMCG00002822 mRNA downstream 212586 3561352 ~ 3562149 (+) True AMCG00002822
AMCG00002823 mRNA downstream 328876 3677642 ~ 3681292 (+) True AMCG00002823
AMCG00002825 mRNA downstream 350803 3699569 ~ 3707678 (+) True AMCG00002825
TU174568 other upstream 232101 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 853588 2492086 ~ 2494594 (+) True AMCG00002784
TU174215 other upstream 1938094 1407046 ~ 1410088 (+) False AMCG00002762
TU174214 other upstream 1945753 1401289 ~ 1402429 (+) True G138506
TU174182 other upstream 2250707 1095939 ~ 1097475 (+) True G138476
TU174694 other downstream 79923 3428689 ~ 3596108 (+) True G138888
TU174764 other downstream 680758 4029524 ~ 4029924 (+) True G138941
TU175054 other downstream 1747965 5096731 ~ 5098744 (+) True G139176
TU175429 other downstream 2798982 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 3718177 7066943 ~ 7073536 (+) True AMCG00002939

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1906375 True 788 lncRNA 0.53 2 NC_048584.1 14269072 ~ 14270621 (+)