RNA id: AMCG00002817


Basic Information

Item Value
RNA id AMCG00002817
length 2718
RNA type mRNA
GC content 0.60
exon number 18
gene id AMCG00002817
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3331717 ~ 3345334 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATGCGAGTCCCAGGAGGAGAGACGGCTCAGCTCCGTCCACACAAGCCCAGCTCCTAATGCGCACCATGCGGCAGGGCTGTGCCGGGGACGGGGGCCCCAGGCTGGCCCACAGCGCCTTCATGCCCAGCCTCCCTCCGAGAAACGTGACGTCAAACTATACAGTATCTTTGCTGAGGGCTCCATATAAAGCACTAGAGGACAGTACTGCTGAGGAGGATGTGAAAGTGCTACACAATCGTCCGAGGAAGCAGGCAGGCAGCACCAACCGCTGGCAGCTGGCCTCCGTGCTGGGCGGCGACCTGCTGGGACGGGCCCAGGCCTCCCGCGCAGTGAGGGCCGTCCTGAACTCCTCCCTCCGTGCCATCAGGACAGCTGACTCTCCGTTCGGTGTGTCTGAGGAGGGGGTCTGCAGCGGGACCCCTGCGTcctgccacccccccccacagcgCCGCAGCTCTCCCCCGGGACACAGACGCAGTGTGAGGCTCCCAGGGTCCCCCAGGCCGGCCACCCCCGAAGACCTCTTCTACCTGCTGTCCCAAAGAGTGGCCCACCCCTCCAGCCCAgATGCGGTGCTGGAGTGTCTGGGGAGCTACTGGGAGCTGCACTGTCCTTATCTCTCCCAGTCCGGGACCCTGACTGAGCTGTACTCCGCAGCCAGGCGTCACAGAGCAGAGACACTGAGCCGCACAGgtggCCAGGGCACCAGTGGCAGAGACATGGGGGGCAGCCTGGGGGACACAGCGCATCTCCTCCAGGACAGACACAAGGaaaccccccccactcccctcatcCTGCGGCTGTGTGTGCGGGACCCCGCCGTCAGCAGAGAGGCCCTGTCGGTGGCCCTGCGCAGTCTCTACACCCCAGAGCCGGAGCTGACGCTGCGGGGGCTGGAGGGGGTGCTGTCGGCTGCCACCCTGCTGGACCTGCCTCCCCTCTACCAGAGGTGCCTCTCTGTGATGGAGAGCCACATCGGGCCCTCGACAGTGAGCCGCTTCCACAGCCTGGCCAGTaagtACCGAGAGGCCACTCTGCTGCAGGCCTGTGAACGGTGGCTGGAGCTGCACCTGGTGTCGGAGCTGCAGTCCCATGTCCGCCTGCGGGAGCTGCCCCGGGAGCTGCTGCACAAGACCCTGCGCTCCCCCAGGCTCTTCACCCCCAATGAGTACCAGCTGTTCCGGACGGTGCTGTATTGGGTCTTCCTGCAGCTCAACCCCACCGTGCCAGTCCTGCCCTCCCACAGCTCCATCCTCACCTTCTTCATCAGTTTGCCCAGGACGGGTGTGTTCCTGGCGCAGGATTTGGGTCAGAAGTTCACATCTCTCTTCCAGTGCCTGCGTCTGCACGGCATCACGGAGCGGGCGCATCTGGAGGAGATCCAGCAGATCGACGTCTTGCCCCAGTcctcgctgctgctgctcttctcCAGGCACTACTACGCTCTCCACAGTGGAGGGGATATGCCCTTAACGGATTTCTCCCAGCAGGCCGTGCGGTTTGGGCTGACTATAGAGAGGGACCCTCAGTGCCGCGCTCTCACCGCCTCGCTCTACGGCTTCTACTTCCTGCTGAAAGCGGCGCGGCTCGGGGACACGGACACCCACGGCTTCTCCATCCAGCGGCTGCGGCAGTGCGACCCGGCCCTGTCCCTGCGCGCCTGCGAGAGCCACCCCTACAGCCTGCGGGCCGAGCGCGGGGTGCGCTACCAGATCAGCGTGCAGGGCCAGGTGTTCAAAGTGCAGGGCCTCGGCCTCCCTGTGTTTGTGACCTTCGCCCTGGTCTTCCCTGCGTTCTGAGCGAAGCCCGCCCAGGGGCCCCGGCGCCGCCCGCCTCTGCCCGGGAGACGCGCTGATCCTGTGGGGAGGACGGGTGTGACCGCGCGCCACAGACAATCCAgccaacaataaaaatgtttgcactGTAATCAGCCCTGAGCGTGAGTCACTAACGAGGTGGTGAGCAGCGCTGTGGCATCCTCTGTGCTCGCGCCCGCCTCGGTGTCGGCTCGTCACACTCGGACCTCCACCTGGGGCACCGAGAACATCAGAAATGGCAGGATTGTACATTGTGGTTTCCTGTCCAAACTAACATACCAAATGACTTGAATGTGAACTTTAAGTAaatcagtaaattaattaatcttttcaaTCGATTCGGTGAACTCAAtcacactaataataataataagagaacAAACTGCATGCTTTCACAGCCGGACTAATCAAGATCCCACGCTGTGTGTGTTGTCACTAATGGCTGTTTCAGTTAAGCAGCCGTATCCCACAAAGGAAACCTAAGAAGATTTATTCTGCGCTGTGGCGAGCCGCGGGGAGGATGGGGCGTCAACGCTCCCAGTGCGTCTCTGCCTCAGTCCCAGCAGCGATGTGTCACAGACAGCTGATAGCACAGCGCTGGGGAGATGAGCCTCGTCTCCTGAAAACAGACACTTGAGCTCGTGCACACCTACCAATACACAACTACATTAACATCAAACACTCCACATTGAAAATGGGTTTGTAAATTGACTGAGCAAACTGCTATCTTTCATTGTCTTAACTTTCCACTTTGGTGCCAGAGAGTCTCGACAGATACGTCACTGCTGTGTCTAAGCAGATGATGTACACTTTTAAGAGATCCGTTTTGCCATTGTGAGATCTCTCCAACAACTtctataaaacaacaaatcctGGGAATACTGTGGaagtcaaaac

Function

GO: NA

KEGG:

id description
K10487 BTBD16; BTB/POZ domain-containing protein 16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174584 lncRNA downstream 218635 3060561 ~ 3113082 (-) True G138799
TU174507 lncRNA downstream 611013 2720412 ~ 2720704 (-) True G138742
TU174503 lncRNA downstream 617029 2714377 ~ 2714688 (-) True G138738
TU174502 lncRNA downstream 623642 2707869 ~ 2708075 (-) True G138737
TU174481 lncRNA downstream 639848 2691430 ~ 2691869 (-) True G138720
TU174679 lncRNA upstream 30914 3376248 ~ 3378038 (-) True G138873
TU174717 lncRNA upstream 579833 3925167 ~ 3928618 (-) True G138906
TU174779 lncRNA upstream 730281 4075615 ~ 4076838 (-) True G138948
TU174869 lncRNA upstream 1110458 4455792 ~ 4456002 (-) True G139024
TU174870 lncRNA upstream 1120620 4465954 ~ 4466189 (-) True G139025
AMCG00002820 mRNA downstream 2761 3304565 ~ 3328956 (-) True AMCG00002820
AMCG00002818 mRNA downstream 38290 3270489 ~ 3293427 (-) True AMCG00002818
AMCG00002813 mRNA downstream 112479 3213625 ~ 3219238 (-) True AMCG00002813
AMCG00002812 mRNA downstream 125161 3198668 ~ 3206556 (-) True AMCG00002812
AMCG00002811 mRNA downstream 140221 3181102 ~ 3191496 (-) True AMCG00002811
AMCG00002819 mRNA upstream 33272 3378606 ~ 3379298 (-) True AMCG00002819
AMCG00002824 mRNA upstream 320115 3665449 ~ 3667197 (-) True AMCG00002824
AMCG00002828 mRNA upstream 583427 3928761 ~ 3953324 (-) True AMCG00002828
AMCG00002829 mRNA upstream 632322 3977656 ~ 3979035 (-) True AMCG00002829
AMCG00002830 mRNA upstream 635485 3980819 ~ 3980998 (-) True AMCG00002830
TU174506 other downstream 612298 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 2406319 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 2407483 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 2407483 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 2510126 812745 ~ 821591 (-) False AMCG00002743
TU174734 other upstream 592430 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 656316 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 3717139 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 4003477 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 4585923 7931257 ~ 7938241 (-) False AMCG00002970

Expression Profile