RNA id: AMCG00002819


Basic Information

Item Value
RNA id AMCG00002819
length 693
RNA type mRNA
GC content 0.65
exon number 1
gene id AMCG00002819
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3378606 ~ 3379298 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCCGTCGCCAAAGCCAGCTGACCCCCAGATGCGTCTTAAAGACTACGGACTGCGTGCGTTACCGAGATGAAGAGCTTTACATTGCAGTCCCGACAAGCCCGGTTCATTTAGACCCCTGGCGAGGGTCCACCGCGCACAGCACATGGCTGGACATCAGCGGGGACCCATGCGCTCTGGGACAGTTCCGACTCCCGGGCACCTCCGGCTACCTCGCCCGAGAACCGTGCGTCTTGGCCCGGGCGCAGAAGCGGCGGCGCTTGGCTGCCAACGCCAGGGAGAGGAGGCGGATGCTCGGCTTAAATCAAGCCTTCGACCGCCTCCGGGGCGTGATCCCAAATCTGGAGAGCGACAAGAAGCTGTCCAAGTCGGAGACTCTCCAGATGGCGCAGATCTACATCTCCACGCTGACCGAGCTGCTGCAGGACAGGGCGGACTCCTCGGAAGACGCTGCGCACAAGAGTCGGAGCCCCGGGCCGGTGCCAGCGGACAGAGCGGCCAGGGAGCAGACCGGCTCGCCCCGGGGGTCGCAGGGGGCAACGCCGGACAGACGGCCGGCTAGGGACACGGGCACACGACTGGACAGAGAGGAGGACTCGGAGGGCTCGGACAGCGACTTGAACGGGAGTGAGCAGGACGCGCAGATACGGGACTTGGTCAGCCTGTGGCAGAGACCCAGCGGCGCTAAATGA

Function

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174679 lncRNA downstream 568 3376248 ~ 3378038 (-) True G138873
TU174584 lncRNA downstream 265524 3060561 ~ 3113082 (-) True G138799
TU174507 lncRNA downstream 657902 2720412 ~ 2720704 (-) True G138742
TU174503 lncRNA downstream 663918 2714377 ~ 2714688 (-) True G138738
TU174502 lncRNA downstream 670531 2707869 ~ 2708075 (-) True G138737
TU174717 lncRNA upstream 545869 3925167 ~ 3928618 (-) True G138906
TU174779 lncRNA upstream 696317 4075615 ~ 4076838 (-) True G138948
TU174869 lncRNA upstream 1076494 4455792 ~ 4456002 (-) True G139024
TU174870 lncRNA upstream 1086656 4465954 ~ 4466189 (-) True G139025
TU174871 lncRNA upstream 1097166 4476464 ~ 4476663 (-) True G139026
AMCG00002817 mRNA downstream 33272 3331717 ~ 3345334 (-) True AMCG00002817
AMCG00002820 mRNA downstream 49650 3304565 ~ 3328956 (-) True AMCG00002820
AMCG00002818 mRNA downstream 85179 3270489 ~ 3293427 (-) True AMCG00002818
AMCG00002813 mRNA downstream 159368 3213625 ~ 3219238 (-) True AMCG00002813
AMCG00002812 mRNA downstream 172050 3198668 ~ 3206556 (-) True AMCG00002812
AMCG00002824 mRNA upstream 286151 3665449 ~ 3667197 (-) True AMCG00002824
AMCG00002828 mRNA upstream 549463 3928761 ~ 3953324 (-) True AMCG00002828
AMCG00002829 mRNA upstream 598358 3977656 ~ 3979035 (-) True AMCG00002829
AMCG00002830 mRNA upstream 601521 3980819 ~ 3980998 (-) True AMCG00002830
AMCG00002837 mRNA upstream 629357 4008655 ~ 4016581 (-) True AMCG00002837
TU174506 other downstream 659187 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 2453208 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 2454372 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 2454372 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 2557015 812745 ~ 821591 (-) False AMCG00002743
TU174734 other upstream 558466 3937764 ~ 3950168 (-) False AMCG00002828
TU174755 other upstream 622352 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 3683175 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 3969513 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 4551959 7931257 ~ 7938241 (-) False AMCG00002970

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1907060 True 821 TUCP 0.52 1 NC_048584.1 14222199 ~ 14223019 (-)