RNA id: AMCG00002821


Basic Information

Item Value
RNA id AMCG00002821
length 180
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00002821
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3435143 ~ 3435592 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATGGTGCCATATTCGAGGAAAACGCGGTAAGCGACGATGAGATTTTCCAGCTGGCCATTTCGGACCTCAGTCTCAACGACGACATTTTACAGAGTGAGAAAATCACCCACTCCATAAAGCTCATCGAGCCCAACAACCCCTTCCAGGCAGTGCAAGAAGAGACGGAGCTAGAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174676 lncRNA upstream 57116 3376246 ~ 3378027 (+) True G138871
TU174604 lncRNA upstream 257533 3172907 ~ 3177610 (+) True G138816
TU174480 lncRNA upstream 743303 2691429 ~ 2691840 (+) True G138719
TU174473 lncRNA upstream 767605 2665458 ~ 2667538 (+) True G138712
TU174384 lncRNA upstream 971507 2461638 ~ 2463636 (+) True G138634
TU174711 lncRNA downstream 291905 3727497 ~ 3727731 (+) True G138903
TU174713 lncRNA downstream 489577 3925169 ~ 3928654 (+) True G138905
TU174716 lncRNA downstream 489577 3925169 ~ 3928619 (+) False G138905
TU174744 lncRNA downstream 554332 3989924 ~ 3990348 (+) True G138927
TU174763 lncRNA downstream 588850 4024442 ~ 4024745 (+) True G138940
AMCG00002815 mRNA upstream 58975 3358793 ~ 3376168 (+) True AMCG00002815
AMCG00002816 mRNA upstream 86377 3348182 ~ 3348766 (+) True AMCG00002816
AMCG00002814 mRNA upstream 168110 3257046 ~ 3267033 (+) True AMCG00002814
AMCG00002810 mRNA upstream 236642 3195140 ~ 3198501 (+) True AMCG00002810
AMCG00002804 mRNA upstream 262682 3170343 ~ 3172461 (+) True AMCG00002804
AMCG00002822 mRNA downstream 125760 3561352 ~ 3562149 (+) True AMCG00002822
AMCG00002823 mRNA downstream 242050 3677642 ~ 3681292 (+) True AMCG00002823
AMCG00002825 mRNA downstream 263977 3699569 ~ 3707678 (+) True AMCG00002825
AMCG00002826 mRNA downstream 275420 3711012 ~ 3711317 (+) True AMCG00002826
AMCG00002827 mRNA downstream 535520 3971112 ~ 3974319 (+) True AMCG00002827
TU174568 other upstream 319062 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 940549 2492086 ~ 2494594 (+) True AMCG00002784
TU174215 other upstream 2025055 1407046 ~ 1410088 (+) False AMCG00002762
TU174214 other upstream 2032714 1401289 ~ 1402429 (+) True G138506
TU174182 other upstream 2337668 1095939 ~ 1097475 (+) True G138476
TU174764 other downstream 593932 4029524 ~ 4029924 (+) True G138941
TU175054 other downstream 1661139 5096731 ~ 5098744 (+) True G139176
TU175429 other downstream 2712156 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 3631351 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 3941095 7376687 ~ 7379487 (+) True G139720

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000189_04572894_04573508.mRNA True 426 mRNA 0.43 3 CI01000189 4572859 ~ 4573653 (-)