RNA id: AMCG00002828


Basic Information

Item Value
RNA id AMCG00002828
length 3258
RNA type mRNA
GC content 0.70
exon number 11
gene id AMCG00002828
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3928761 ~ 3953324 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGAGAAGCCACTGAACAAGCCCACCATGGTTTCCAGGCTGCCCAAATTCGGGGCCCGCGCCCCAGGCTCCAGCGGACTGCTACCCAAtggctctggctctggctccGGCTCCGTGCTGCCCGGCGGCGCCCCTGAGGGGAAGGGGTGTCCGGTGAGCCACCAGAACGGCATCGTGCGCATGCCCTCCTTCTCTCTGAAGTGGAAGCAGGGCAGCGCGCCCCCCGGTTGCCTGTCCAGCCCCGAGGAGGGGGCCGCAGCGACGGACCCCGCAGAGACGGCAGAGGACGGGGGCAGCGGGCGGACGTTACCCTCGGTGCGAGAGATCAAGAAGCCCTCCGCCCCCACCAGCAGGATGCGGAAGGCGCCGGCTCCTGTGGCAGCCGCCTCCGCCACCACCGCTGCCACTCCGAGGTCCGTCCCCCAGACGTCCGTCCCCCAGACGTCCCGGGGCCCTTCGCGGGGCAGTGGGGCGCCCCCCCGCCGGCCCCTATCTGGGCAGAACTTCTACAGCGGCAAGATGGGCCTTAACGGGCTGGGCGGCGGGTCAGGGCGCAGTGGGTCGGGCCTGCATAGACCCAGGGCCAACTCGGGCTCGGCGCGCAGCAGCTCACGGGAGAGCCTGACCCAGTCCAGCGACAGCCTGCGTTCCGGGTCCCTGGAGAGCATCGTTCGCTCCCAGAGCTTCTCCCACGGCACGCAGCTGCCTTCACCGCCTGGCCTGGCCATGACGCGCTCCTACTCCTTCAACAAGGCTGCCGAGCTCGCCAAGGTGCCTGCCCACCCCCAGCAGCGTGGCAAGGTCCTGCCCGCCAAGTCCGCCCCCGCCCTGGGCGTCAGGGGTCCCAGACCGGCGGGGGGGGCCCAGGTCGGGACGGGCTCCCTGTTGAGGCCCGGTGGTGGGGTCGTGTCGGCGGCTCCCCTTGGCACCCTGAAGAAGCCGTTGCTGCCGAGCGCTGTGCTGGCGAGGCCCTCGGCGCTGAGCTACAAGCGGACGCGGCCCTCGCTGGTCAAGTCTCCGCGGCCCCTGCTCGCCGGGAGGGAAGAGGGTGAGGGGGCTGTGAACGAGAACGGCAGAGACTTGGGGGTTGGCGGTGCCCCCCCAGAGCAGCagcctccccctctcctctcctccgcACTGGAGGCCCAGCCCCTCTTGGTCGGGGGACCGGGGCCGAGGACAGCGGAGGAGCGGGAAGAGCCGGTGGAGCAGGTGGGCGGCCCCCTGGCTCTGAGGGAGTTGGACTCCAACCTGCGCTACCTGGGGGACGGCCTGGAGGACATGTCCCTGTCGTCTGCCTCGTCCCTGGAGCGCAACGACACCAGCGAGGAGTACCTGGACGACTTCGACAACCTGGGCGATGGTGGCGGGGGGGCGCTGCTGCTCCTTAACGGCCCAGGGGGGGCGGTTGCCGGCCTCCTCCAATCGTTGCCCTCCGAAGCCGTCGCCAACAACGCCCCCGGCATCCGGCAGGATGGCCCGCCCACGCAGACGCACCTGAGCAGCTTCCTGGCCGACGGCATGGACTGGGTGGAGGTGGGGCTGCCAGGCAGTGAAGATGATTTCGGGGTCTCGCACGTCCCCCGTGCAGCCCTGGCCCTGTCCCCAGATGTGGACTTCCCCGTGGGCTCATCGCTGGAGCTCTCGCCCTCCGACAGCTCGGGAGGAACCTACATGTGGGACGAGGAGGGCATGGGGGAGCCGCTGGGCACCGCCACCCACCCCTGCGGCAGCTACGATGACTCTGAGATCAACAGCATGGACATCCTGAACAACCTGGAGAACCTTGAGTCCGGTGACCTGGAGGACGATGACCTCATGCTGGACATAGACCTCCCTGAGGACGGATCCCTGCACAGCGGAGACGCTGACGGCATGGATCGCTCGGAGCGAGGGGGCCGGCAGGGACACTGGAGGAGGAGGCATCACCGCTGGAGCGGCCCGGACCACTTCCACAACGACAACCGTGCCGCTGGGTTCCTGAGCTCCTCTGCGGCGCAGTACGAGGGCTTCTCCGTCCCGGGCTCCGGCCACGCCGTTCCGCGCCCCCTGCAGCCCGCGGGCCGCCTGGAGAACTCGGTGGTTCTGGACGAGCTGACGCTGAGACACATGGCCCAGGACTGCACCTCAGTCAAGACGCAGCTGCTCAATCTCAGGAGGCTGCTGCAGATGGGAGATAGTGGCCGGATCCAGGACTCCCTTCTGTCAGGAAGCTCGAGCCCAGAGCCTCTGGAGGAGCCCAGAACCGCCCTGCAGGTGGAGGAGCTGATGAAGGAGGTGCAGCAGCTGAGAGAGGAGCTGAGGAGCCGAGACCAGACCATCCAGCAGCTGCGCCAGCAAGCGtCCGCCCCCCCCCAGCCCATGCAGTGCGTCTGTCAGCAGAGGCCGGCGGCCGAGACCAAGTCGGAGAGACGGTCCCACCACGACAAGTTCACGCAGACGCCCTGGAGAGGCAACGCTGGTGTGCTGCCTGTTCCCTTCTTCTCTCCCTGGCAGGCCTCGGGGCACCCCGGGCCAGCGCCCCACTCCGGAGACAGACCTCAAATACTACAGCCTTCCAGCCCCTGTCGCAGCGAGTTCCTCGGCCCGGGAAGACTAGCAAGAACAGCCCCCACCGAGGGCCCCAGTGACCGCGCCTCCCTGGCCCTGCTCGAGGCCCGGCCCTGGGAACGGCCCGGCTCTGCTCCTCTCCGGGACGCCGCTGCTCCTGCTGCTATGCCCCCCCCGGCCCCAACGCAGGGCCCCCCCGTTGAGGTTGGCCGGCAGCCCCGTGTCCCTGACGCTGAGGCGGGGCCCGGGGAGGGGGGGTGCGGGGCCATGCTCTCTGGGAGGGGCGCCCCGGAACGAGCCGCTCCGGCTTCCCAGAGACTCGGCGTCAACGGGCCCCCCCGCGTCCTGCAGCCCCCGCGCTTCCACAAGAGAGTGTCCGTCCCCACCCTGTCCCCAGAGGGTGCCGCCTGGGTCCGAGGGCCCGCGCCGGGCGACAGAACTGGAGAGGGCCGGCCCAACCCCAGGCTGCAGATGCCGGCCTCCTCCGCCTCCACCATGGCTAAGCAGCAGCCCCATCCTCCCCCGGGAATCCAGCCCGGCCTCAAATCCCAGCCCCAGGCTTTGGGCCTGGTACAGGTCCCGGTCCCCTGTGGCCCCCACAGGCCTCTGGGGCTCAATGACCGGGAACAGGAGGGCAGCATACCCCAGAAATCAGGCCTGCTTCTCCCCAGCCACTCCCGCCTCCCCAAGCCAAAGATCCACTGA

Function

GO:

id name namespace
GO:0007369 gastrulation biological_process
GO:0060026 convergent extension biological_process
GO:0060027 convergent extension involved in gastrulation biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174717 lncRNA downstream 143 3925167 ~ 3928618 (-) True G138906
TU174679 lncRNA downstream 550723 3376248 ~ 3378038 (-) True G138873
TU174584 lncRNA downstream 815679 3060561 ~ 3113082 (-) True G138799
TU174507 lncRNA downstream 1208057 2720412 ~ 2720704 (-) True G138742
TU174503 lncRNA downstream 1214073 2714377 ~ 2714688 (-) True G138738
TU174779 lncRNA upstream 122291 4075615 ~ 4076838 (-) True G138948
TU174869 lncRNA upstream 502468 4455792 ~ 4456002 (-) True G139024
TU174870 lncRNA upstream 512630 4465954 ~ 4466189 (-) True G139025
TU174871 lncRNA upstream 523140 4476464 ~ 4476663 (-) True G139026
TU174872 lncRNA upstream 541704 4495028 ~ 4495418 (-) True G139027
AMCG00002824 mRNA downstream 261564 3665449 ~ 3667197 (-) True AMCG00002824
AMCG00002819 mRNA downstream 549463 3378606 ~ 3379298 (-) True AMCG00002819
AMCG00002817 mRNA downstream 583427 3331717 ~ 3345334 (-) True AMCG00002817
AMCG00002820 mRNA downstream 599805 3304565 ~ 3328956 (-) True AMCG00002820
AMCG00002818 mRNA downstream 635334 3270489 ~ 3293427 (-) True AMCG00002818
AMCG00002829 mRNA upstream 24332 3977656 ~ 3979035 (-) True AMCG00002829
AMCG00002830 mRNA upstream 27495 3980819 ~ 3980998 (-) True AMCG00002830
AMCG00002837 mRNA upstream 55331 4008655 ~ 4016581 (-) True AMCG00002837
AMCG00002836 mRNA upstream 69257 4022581 ~ 4029995 (-) True AMCG00002836
AMCG00002838 mRNA upstream 81046 4034370 ~ 4035880 (-) True AMCG00002838
TU174506 other downstream 1209342 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 3003363 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 3004527 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 3004527 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 3107170 812745 ~ 821591 (-) False AMCG00002743
TU174755 other upstream 48326 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 3109149 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 3395487 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 3977933 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 4532037 8485361 ~ 8494596 (-) True G139933

Expression Profile