RNA id: TU174734


Basic Information

Item Value
RNA id TU174734
length 611
RNA type TUCP
GC content 0.67
exon number 6
gene id AMCG00002828
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3928761 ~ 3953324 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctctgctctctGAGACGCTGACGGCATGGATCGCTCGGAGCGAGGGGGCCGGCAGGGACACTGGAGGAGGAGGCATCACCGCTGGAGCGGCCCGGACCACTTCCACAACGACAACCGTGCCGCTGGGTTCCTGAGCTCCTCTGCGGCGCAGTACGAGGGCTTCTCCGTCCCGGGCTCCGGCCACGCCGTTCCGCGCCCCCTGCAGCCCGCGGGCCGCCTGGAGAACTCGGTGGTTCTGGACGAGCTGACGCTGAGACACATGGCCCAGGACTGCACCTCAGTCAAGACGCAGCTGCTCAATCTCAGGAGGCTGCTGCAGATGGGAGATAGTGGCCGGATCCAGGACTCCCTTCTGTCAGGAAGCTCGAGCCCAGAGCCTCTGGAGGAGCCCAGAACCGCCCTGCAGGTGGAGGAGCTGATGAAGGAGGTGCAGCAGCTGAGAGAGGAGCTGAGGAGCCGAGACCAGACCATCCAGCAGCTGCGCCAGCAAGCGtCCGCCCCCCCCCAGCCCATGCAGTGCGTCTGTCAGCAGAGGCCGGCGGCCGAGACCAAGTCGGAGAGACGGTCCCACCACGACAAGTTCACGCAGACGCCCTGGAGAGGCAACGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174717 lncRNA downstream 9146 3925167 ~ 3928618 (-) True G138906
TU174679 lncRNA downstream 559726 3376248 ~ 3378038 (-) True G138873
TU174584 lncRNA downstream 824682 3060561 ~ 3113082 (-) True G138799
TU174507 lncRNA downstream 1217060 2720412 ~ 2720704 (-) True G138742
TU174503 lncRNA downstream 1223076 2714377 ~ 2714688 (-) True G138738
TU174779 lncRNA upstream 125447 4075615 ~ 4076838 (-) True G138948
TU174869 lncRNA upstream 505624 4455792 ~ 4456002 (-) True G139024
TU174870 lncRNA upstream 515786 4465954 ~ 4466189 (-) True G139025
TU174871 lncRNA upstream 526296 4476464 ~ 4476663 (-) True G139026
TU174872 lncRNA upstream 544860 4495028 ~ 4495418 (-) True G139027
AMCG00002824 mRNA downstream 270567 3665449 ~ 3667197 (-) True AMCG00002824
AMCG00002819 mRNA downstream 558466 3378606 ~ 3379298 (-) True AMCG00002819
AMCG00002817 mRNA downstream 592430 3331717 ~ 3345334 (-) True AMCG00002817
AMCG00002820 mRNA downstream 608808 3304565 ~ 3328956 (-) True AMCG00002820
AMCG00002818 mRNA downstream 644337 3270489 ~ 3293427 (-) True AMCG00002818
AMCG00002829 mRNA upstream 27488 3977656 ~ 3979035 (-) True AMCG00002829
AMCG00002830 mRNA upstream 30651 3980819 ~ 3980998 (-) True AMCG00002830
AMCG00002837 mRNA upstream 58487 4008655 ~ 4016581 (-) True AMCG00002837
AMCG00002836 mRNA upstream 72413 4022581 ~ 4029995 (-) True AMCG00002836
AMCG00002838 mRNA upstream 84202 4034370 ~ 4035880 (-) True AMCG00002838
TU174506 other downstream 1218345 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 3012366 923010 ~ 925398 (-) False AMCG00002752
TU174135 other downstream 3013530 923010 ~ 924234 (-) True AMCG00002752
TU174136 other downstream 3013530 923010 ~ 924234 (-) False AMCG00002752
TU174097 other downstream 3116173 812745 ~ 821591 (-) False AMCG00002743
TU174755 other upstream 51482 4001650 ~ 4002804 (-) True G138932
TU175621 other upstream 3112305 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 3398643 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 3981089 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 4535193 8485361 ~ 8494596 (-) True G139933

Expression Profile