RNA id: AMCG00002836


Basic Information

Item Value
RNA id AMCG00002836
length 2516
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00002836
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4022581 ~ 4029995 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGATTGTGTTTGTAAGAAGGTCATTTAGTGGGTGTAAAGTCCAGGCTGTCCACGCCGGCACTTCCCTGATGACAGAGTCACACACAGACGCAGCACAGCCTGCCCCGCTCTGCCGACGCCACAGCATTGCCCGGGGGAAGCACCAACAACAGATACGATCCACAACGACAGCGGTAACTGCGACTCCAGACATAAACCCTCCTGCACGgcccctgccctctctctcagctcccCCACAGCCGGCAGAAGCAGCGGCCCGTCAGCCGGAGACGGAGGAGTCCTTTGCCTCAGAGGTGGGACTGAGATATCTGTGCAACATCGAAACAAGACAAGCCGCACTGCCCTCTGGTGGCCAGGGACCCGGTGTGGCACTGCAGCACTGCTTCCCGCATTGCCTGGCTGTGGTTCTGGAGGACACTGTGCTGGGTCGCTCCCAGCTCAAAGCCCTGGCCCCCACGCCTCGATATGGCGCCGCCCTGCTGGCTGTGGTGCTCTACTCCGTAGGCAAAACGCTCTACAGCTTCCTCACACGGCTCTTTGTCACTCAGTATCACTACAGAGGTCTGGTACAGCTCGCCTTCGCTCAGGCTCCTCCCCAGATGCTGCTGACCCTGCTGGCCGCTGTGGCGCTGCAGACTCTGGGCGCCGTGTCCCTGCAGCCCTTCTCCCTGCGGCGCGGCGAGCAGCTGCTGGTGCCGGCGGTCGGCTCTGGTGTCCAGGCGGTGCTGGGGCTGTGGGCGGAGGTCAACGCCCCCGGTGGCCTGTTCTCCCTcacacagctgctgctgccccTGGCCTGTGTGGGCTGTAGCCACGCCCTGGCGCTGACACGGACGCCCTCCCAGCACTGCACTGCCCTGCTGGCCGGCTGGACGCTCGTCCCATTGCTGATCACAGtCCTGCAGGTGTCCCTCTGGGCCGAGCCGCTAGTGGTCCTGTACTCAGCTCTGAGTGTGCTGCTGCACAGCCTGTCCCTGGGCTGGCTGGCCAAGGTGGgggagcagcagcagtgtgAGCCAGATGGCCGGGCCTCTGCGCTGGACCTGCACTTCACCCTTTGCGTCGACAGCAGCCTGGCGCTGGGCCTCCTCTGCCTGCTGCTGCCCGGCGGCCTCAGTGAACTGGGCCAGGGCAGCTGGCACAGCCTGCTCTTCCTGGGGTACCTGCTGGGCGTGCTGGCACTGGGGGCCCTGCAGAGCCTCCTGCTGTCCCTGGTGGCCCTGTGCTGCTCCCCGGTGGCAGCCGGTGTCCTGCACACTGCGCTGGACCTCACCCTGCCTCTGCGCAGCCTGCTGTAGCTCCACTGTGGATGGGGACCAGCCCGGCAAACTCCTGGAGAGACGCTTTCGTTTGTTTTGATCATGGTCAAATGATCACCTGCATTGAcatcttttgcattttgtgtctGGCAGCACTGATGCCTCGACCGACCTGAACCCCAGCAGGGTCAGGTCAAGACTACAGCTGATTGGTTGAGCACTgttgctcacacacacatgcatgaaaTGCAGTTCAAGTTTCGTTACAGGGCTGTGATTGGAGAAATTGATGAAGAAACGGATTCTGCCCTGGATCTGGGCAACATTCGTGCAGAATCACACAATTCTGTGAGGTATAACACAGGCCTGGTTCTTGGGCATTAACCACATTAACCACAAAATCCAAAATGGCTTCCATACTTCGTATGACTCCGGAGAGCTTCGTCCTTTTCCGAAGCTGTAAATCAATTCTCATTGGTTCAGAGGCAAACGTAAACATTGACTCTGACAGGGCTCTCCATTGGTTGTGAAGCCTGGTTTTTGAGATGTCTTCATTTGGTTGGAGTGCCGTTTTAAGGGATAGTGATTTCTTCTTCTTACTATGtattttcaacacatttaaactaATGTTGACgaactgcaataaataaaaaataaaaaacctgccAGAATGTCTATGTGTACCACAAACCCTAAATATTATCGCTGTTTGTCTATTGCTGGTTTTGGGATTTGTtatgcacacattttgaaacCCATCTTGCTTTGaaacacaatgtaataaaacaaacattacaaaactgtacaagAGGGGAACTTTCTTAAGTGCAATATGAATTATGTGCAGAATTCCTCCGCTTACCGTCTCTCAGCAGTCAGCAAGTTGTGACAAGTCATGCGAGTTATGAAAAGGCTtatgtatagtttaattatGTCATAGTTGCAGTTTACTTTGTGTTCAATGCATAGATGCAGCGAGAACTGGACTATgttacttagttattaatggacaccaaacgatggtgcgaatggcctcctctcaattagACACttgatgtaattgtaattgaaaacaattgGTTGGAACAATAACctgcagggtaggggctcctccagtttttaggtttttaatgttttccccTGTGCGACAGTCTCACTAAAgcaatttcaataataaaataacttgaggacaatgttataatatttacataagcattgtgtgtgttgggcAGTAAAGAACATGTCTTTttgaacaa

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174717 lncRNA downstream 93963 3925167 ~ 3928618 (-) True G138906
TU174679 lncRNA downstream 644543 3376248 ~ 3378038 (-) True G138873
TU174584 lncRNA downstream 909499 3060561 ~ 3113082 (-) True G138799
TU174507 lncRNA downstream 1301877 2720412 ~ 2720704 (-) True G138742
TU174503 lncRNA downstream 1307893 2714377 ~ 2714688 (-) True G138738
TU174779 lncRNA upstream 45620 4075615 ~ 4076838 (-) True G138948
TU174869 lncRNA upstream 425797 4455792 ~ 4456002 (-) True G139024
TU174870 lncRNA upstream 435959 4465954 ~ 4466189 (-) True G139025
TU174871 lncRNA upstream 446469 4476464 ~ 4476663 (-) True G139026
TU174872 lncRNA upstream 465033 4495028 ~ 4495418 (-) True G139027
AMCG00002837 mRNA downstream 6000 4008655 ~ 4016581 (-) True AMCG00002837
AMCG00002830 mRNA downstream 41583 3980819 ~ 3980998 (-) True AMCG00002830
AMCG00002829 mRNA downstream 43546 3977656 ~ 3979035 (-) True AMCG00002829
AMCG00002828 mRNA downstream 69257 3928761 ~ 3953324 (-) True AMCG00002828
AMCG00002824 mRNA downstream 355384 3665449 ~ 3667197 (-) True AMCG00002824
AMCG00002838 mRNA upstream 4375 4034370 ~ 4035880 (-) True AMCG00002838
AMCG00002841 mRNA upstream 189181 4219176 ~ 4221061 (-) True AMCG00002841
AMCG00002844 mRNA upstream 252767 4282762 ~ 4298336 (-) True AMCG00002844
AMCG00002843 mRNA upstream 276331 4306326 ~ 4336926 (-) True AMCG00002843
AMCG00002851 mRNA upstream 552587 4582582 ~ 4600633 (-) True AMCG00002851
TU174755 other downstream 19777 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 72413 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 1303162 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 3097183 923010 ~ 925398 (-) False AMCG00002752
TU174136 other downstream 3098347 923010 ~ 924234 (-) False AMCG00002752
TU175621 other upstream 3032478 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 3318816 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 3901262 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 4455366 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 4817037 8847032 ~ 8847840 (-) True G140006

Expression Profile