RNA id: AMCG00002843


Basic Information

Item Value
RNA id AMCG00002843
length 7555
RNA type mRNA
GC content 0.54
exon number 51
gene id AMCG00002843
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4306326 ~ 4336926 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTGTCTAGAGTGTCCCGTTGCTGAGATACAGCGGCCAACACAAGCCACGCTGAGgagaaaacaaagtttacaacaACTTAATcgcaaataaaatgcaaataaactatTACACATATTGTACCGTGTGAAGTCAGTTGGTCGTGGCCGGAATCTGGACCGAGGCGATTGCTATGAAAGCTGTCTGGTGAATTAAAACGGTTAAGTGGGGGCATTGTTAAAGCGCTGCCCGTCTTAAACAACATGGACCTGCGCATTCGCCAGTTTCTCAGCAAGGCCGGATCCGAGAGAGACTCCGAGGCTTTGAAGACGGCGTATGAGCTGATGAAAGCAGGCCGAGCCGGGCGGGGCACCAGCTTCAGTCCCGAGTTATATGTTATTTGTGCAGAACATGCATTGCAGTCAGGACACAGGGAGATCAGTACAGACTGTCTGACGATGTACTTGAAAGAAAAACCTCCATCCAATCAATTTCTTGGCAGAGCGTATCTGTGCCAAGGCCAGCTGAAAGCTcctcaaactgctgaaaactTGGAAGAACTTGAAAAGGCAGTGATGTATTTTCTGAAAGCTATTGAAATCTCAAAAGAACAGCCCAGgtaTCACTTTTTGATTTTCAACGCCACTGTGCTTTACTGGCAAATGATCAGACCCTTCCTCAGACCTGGCTCTCGACAGTTTCTAATACCCTCCTTAACTCAGGTTGTCAGCACTCTGGAGGAAATTGGGGAGTCAGACTTGAGCTGGAGGGCACAGCTAATGTCGGAACTGGTAGAATGCCTTTTAGATgcagggaaaacaaaagaagcagCAACTTTTGCCAAGATCACATCAGAATTTATTGAGTCCAATGTTCCTCATCTCTACCCAAAgatattttctttgcaggtgCGCCACAAACTAACGGAACTGGTCAAAGCAGCCAAAAAAGCCAAAACTAATCTTATTTTAGATGTGATTTTTAAGATGCAGAGATTAAAATCTCAACTGGAGACCGCTGAACCCATTAAAGACAGCGCCGCACAGCTCAAAACCATCTTACTCCTTCTGACGCAGTCCGATCTGGACCGCCCAACCAGTCCGACCCAGGGGTCAACCTCCTGGCCAACAGAGGGGGCTCCCCAGATTCCTGTGATGGAAAGGGTTTCGTTGCTACTAGAATTAGCTCATCTGTCACTGGAGATGGACAGCCCACACGTCGCTGCGGAGAGTTTGCTAGAACTAAAGCGTGCTGGGGTTACAGATTTTGGGAGTCTCGCGGCCATAGAGTGCCTGAGCTGCGAACTGGAGCTGAAAAAGCAAGGAGGGAAGATTGAAGAATATTCCAAAAGTGCAGTGGAGGCACACCTAAAAATGATCAGGAAGTTGGACCAAACCCTGCAGAACGCGATGAGGGAGGGAGACGTGAAAGCCATCCAGGTGGTCTGTGCCTCGCAGTGGGGTCTGTGTCTGCCCCTTCTTCAGCACAACCTGAGAAAGAAGATCAGAAATCAGCTCCTCCGGGTGGCCGATGCCCTGGAAGAGACAAGCAGCCTGTTGTTTCAGCTGCGGTGTCAAGTCCATGCTGAGATCAGCATCATAGAAGAAGACGGAGACCACATAGAGGCGGCTCTGGATCATGTCTGCAAAGCACTACGTCTGGACGAGAAAGGGATATACCGGGATCGCCTCCAGACTGCCCTCCGTCTCCTGCAGCTGCGCACGGCGCTGTACGAGACCCCTGAAAGGACGGAGGACCGAGCGGCTCTCATGATAGAGCAGGCAAAGAAAGCGAACCTGAATGACGACGTGAGGAAAAAGCGCGCCCTGTTGGTCAATGCCGGAATCGCTTTAGCACCGGACGCGTTTCAAGTTGTCCTCGACGGAGACAACGAAGCCAAGGTTGCAAAAGCCAGCGGAAGAAACGGTCAAATCAGCCAACTTTGTGCTAAAGCTCAGCATCATACCGTCTCTGTGCAGAAGGCAGAGGGACACCTGAAACGGCTGGCTGATCAAAATGACAAGGAGAGGATGCGGCTCTGGGCTGCTTTGGCTAAGCTGGCCAGGAAGCAGGAGATCTGGGATGTGTGTCGGGCAGCGTCTCGGTTCTGTCTCCTGTATGATGATGGTCGATGGAAAGCTTCAAGAATTGAGAATGATTTGAAAGATGAAGAAAGTACTGCGGAAGGAAATCAAACTGATGGAAGTCTGGCCACCGAAtcgataaaaacaagaaagcaatttcacacaccTGAGAGGGATCTGATGAGACTGCTGGCGGAAATACGGTTCATAAACGCAGAGGCAACTGTACTCAAGTTAAGGTCAGAGGGCGTACAGCTTAATGGCAAGCCAAGTCCACGAGAGGACAGAAGCAAACGTCCTGCAGGTTTCGTTGCAAAAGATCCAGAAAAGAATCCAGAATGGCTAATCTACAGAGACTGGATACAGGGCTTGTCCGTTTACGCGACACACAACTTTCTGCGTGCGGCGGAGCTGGGCGCTGAGCTACACGAAGCCTGGATCGTCTGTAACACAGCCGTGTACGTCTGGAACTACAACCACCACCTCATAAAGGCTGGGGGACAGAGGGAGCTTGTGGAGGCCTTTcagaaattaattgattttctcAAACAGACTGGACACTCGGGGGAAACGGTGCTCTTTGTAATGCTGTGCAATGCCCTGGCTCAAGGCCTGACCCTCCCCTGGATTCCTGGCTCGGCTAAGAGTGACGACGACAAGCTGCAGCGAGAGAAGACCCCGGCGGCTGACAGGGGCAGGAAGGGGGCCGGGAGAGGAGTGGAGAAGACGGGCAGCAGGCAGAGCTTTGTGGTGGATCCCAGTGGCATGTCAGATGTGAAGAGAGCTCTGGAGGTGTGTGAGTTTGCGCTGCAGCTCACCAACGGCTCTGCATCGGCCGACACAGTGCCTGTCGCCGTACGGAAACAGGTCATCGCAACGTGGGTCCGGATTAAGCAGCTTCTCCAGCAGCCGAAGCTTGACCTGGACGATGAGAGTAAGAGTGATACCCAGAGCGCAATGACAAGAGTGCTCGTCGGACTGGAGATGCACTCGTGCAATAACTCAAGATTAATGGAGTTCTCCGCTCCCAGTCTCTCTGTGTTGGCAAAAATGACCTCTGACTGCAACTGGACAGATGCCGCGGTCGAGCTCGAGACTTGGCTGCAGCTCGCGCACTTCGCCCGTGTGAGCGGCGACCATGAATTAGTGATGGCGTGCTCCCAGAGGGCATTGCAGCTAGAAACGGCAGCTGGAAGAAAAGTGATTTCTAGTAAACAAGAACTGTACACCTCTAAATCAGTCCAGGAGATGCTGAGCAGTGTAGCTTGCATTCAGGGGCAGAGTGTGATGCAGAGAGCGTCAGGGCGGCCGCATACGCGTCAAGAAGCCCTGAAAGCTTTTGAACTTGCTGTCTATTTTGCAGAAAAGGCTGGAAACCATTCACTCTGTATGAGCGCAGCCCGTCACTTCTGGAACGCCTGTTCGTCTCTCCTACCAGCAGCATCTGAGAGGCAGCAGCTGAGACGTGCCGTTGAGAAGATACTGAACGCCATCGCTCGGACGAGCTGTCAAGAGAAAACGGATGGAGACAAACCGATTGCCGAACCCAACACATTTGCAACTTCGTCAGTTGCAATCTCATGTGGACCTTTGGCTACAAGTGTGGGGAATCCAGAGGAGGATCTCACTCTCAGAGCCGCTCTGTACGGACTGTTATTTCACATCCACGCCGATCGAGAAGACTGGGAATCGGGCCTTCGAGTTCTGGATCAAGCGATCGGAGAAATGCCAAGAACGAAGCACAGACTCCTAATTTTCAAGCATCGCGTGGTGGTGAAGGCTAGGCTGGGCCAGAGCTTTCTCATGGACATCCAGAAGTTCAGAGATGAAAGCGAGGACTATGTGTCCTGCCTGTGGAAGCGCGTCGCTCTGTGTTGTAAAGAAACTGTCGGGCAGCTCGCCTGCTACCAGAACGCCATCCTATCCTTGCAGAAGCCAGAAAGCGCCTGGCAGAAGGTTGATTGCCTGCTTGAATTTGGGCAGTGGCTATACTGTAATCAGTTCCCCATCACAGATGCACTTCACCAGATTGAATGGGCGATTGATATTCTGCTGCACATGAAATTTGAGGAGAAGAAAACAGATGaTGTGAAGGGAAGGCCGAAAAGTAGATCGAAGACCAAACAATCGCCAGAAAAAGTATCGTCTGAGACCGTTGAGGAACCAAAGACCCCTAAAACAGAAGAGCCAGCTGAGAGGGACAACCTAATCCCAGTGCAGCAGCAGTCGGAGATCGGAGTGACGTCTGCGAGTCCCAGCCTGTCCCTTGCCGATGTGAAGAACGTGAAGCAGCTCGAGGCCCTGTTCAGAGCCCACACGCTGATGGCTGCCATCGCAGACCGGGCCTCCCCTCAGCGCCAAGAGCACTGCCTCATGGCGTATCATTATGTGCTGCGGATCTGGCAGGTATCTTTAGCAGCCGCTGGGCCCGTCATTAAGGAGCTGCTGAAGAATGCGTCTGGGCCTGCTGCTCCTCCGACGCCGGTTCCCACCccgaagaaagagagagggaggaaatcCAAGGAGgCAGCTCTTCCTCCGCCTGGTCGGGAGAAACCGAAGCGAAAGGGTACACCGGACAGCGTTCCCGGCAGCCCAGAAGAGTGGGCCGTCTACGACTGCCCCGAAGAGGTTCGACAAGCGTTCAGGCAAGATGCCGGCCTTGACTCAGTGAACGAGCAGAGCATTACGCATCCGACTCGGAGCTTGTTCTTCTTGGATCAATTGGTGACTGAGCTCCAGGCGCTGTCCTTAACTCACTTGACTCTGCCGGCTCTACAACTCGCCGAAGTGATTGCCCACGTGGTGCTGGGCTGCAAGAGTCTGTCTGACCTCTACCACCTGAGGATTGCAAGAAACTCTTCCCAGCTCGGTCTGAGCGTGTCTGCAGAGTACCACGAGAAGGCTGTCGGAGCGGTGTTCGTATATGAGGAGGAACAGATTAAGTGTCGAGAAGCTATTGTTCTGCGCAAGGAGAAGGAAGGAGCCGAGATGAATCGCGATACAAACAGTACAACACCAGGGAACAATGCTGCTGGCGCCTCCCTCTCTAGAAAGAAAACGAGCGGGTTATGTGTTCATGAGATGTGGATTGACAAGGCAGAGGTGTTGCTCGATATGGGTTTGTACCAGCCGGCCAGACTCCTACTGTCGGAGGCTCATATGGCTGCCAGGGGACTTTGTGACAAGGCAGCCGAAGCGCGGTGTCTGTATCTCCTGGCGGTTCTGGCTAACTACGAGAGGAACCACAGTCAGGCCACGGCTCTGTTTGTCAAGGCCCAGGAGATCGGAGGGGACGAGCGATTCTGGTTCTGTGTCACCGTGGGCCTGGTGGAGGCCACGCTACGCGGGGGCGGCGCTGATCGAGAAACGCTGGCGTGTATGATTTTAGAACGAGCAGCCTCCGTGTTGAGGTCGGCCTGTGAGGAGAGACCAAACCGAGCGCCTGTTCTCCAGTCCCTGGTCGCGTCTCTGGAGGCCAGACGAGCAACTCTACAGATCCAGGCGCTGCGTCGCGGTCATGTCGGCACCACCACAGACCCGGAGGCGGTCCAGAGGCTGATGGGGAGCTGTGATATATTGAGGCGATCAGAGGAAGAGTTTTGTCAACTTGGACAGGGAGAACAAGCAGTGGATGCAGTTGTGGAGCAAGCGAAGGCATTACGGATGCTTGCAGAACACACAGACGATGAAGACGACAAACATCACCATCTGCTAGAAGCCTATTCCTCAATGCTCCGGGCCGTCACCCTGCAGGAGGAAGCCATCTTCGGTGTGGTCGGCCTGCTGCATCCTCAAGAGACCTCAAGGCTGAGCTTGCCAGCGATGAGGAAGCTGGCCGACCTGAGACTGGCCCTAGTGGACCTGGCCTTAGACCTGctcgagtgtgtgtgtgaggaagaGAAGACGCGGGCctcagaggaagagaggaaggggTCACTGCAGAAAGCCGAGGAAGAGTTTGTGCGCGGCACCCCCGACCCGGCGTCCGTGCAGCAGgaaTGGATCACTACTGGCAAGACCTTAGGACAAGTGGCTCTGACCCAGCTAGAAACTGTGCATGGCCTGCATTTCGTGTCTGTGGAAAGGAGGGCGAAGACCTTGTGTCTGCTGGGGAAGTGTCTGCGATTGCTGGCTGCTCAGGCGGACCCCCTTCATCACTCGGCTCAGTGGGACGCTCACTGCATGGAGGAGACAAACCCAGCTGTGAAAGAGGGTTCAGACGGGACGGAGGAAGGACAACCACGACACAGACAGCGGCAGTTTGACACGCATCAGGAGAAGAAATACTCGACCAAAGCGGCTAAACTTCAGgCTAGGCGGATGGTGGCGCAGCAGTTCTTGGCTCAAGCCAGTGAGGCCCTGGCACAAGCCATCGGTTTATCACTGAACCACGACTTCACTGCCGTCTTGGAAGAGGCCAGCCTCCTTATGCTCAAATGTCTCGGACAGTTTGAACCGGCTTCTGCAGGTCAATTCCTGGCCCTGTACCAGAGCTGCCGCTGTGCGCTGGCGATGGGTGATGTCTTAAGAGCCGACAACCCCGACCCCAGCAGCTCCCAGCTCTCCGCGCTGCTCAACCTGCAGCACAACCTGCGACACGCGAGTGCTGCGCCCAGCAGCCGGATGAGGGTGGTGGAGGAGACTCTCACTGGGATCTCACAGGTCTGTTCTATACGGAGCATTGATTGAAAAAACGAAAACAGCCGAAATGCAGAAGGGAAAGGGGATTCAACAAACTGGCTCACTGGTCTGTACTAAAGTTGCCAGAGCAGCAGTGGACCCGGAGATACTCAGCAGACTCCTCACCTGCGCTCGCTCCCGCAAACCAGAGATGGAGGATATTGTTCTCGAGGACGGAGGCGACGCACCGCACAGAAACGCGGCACCAGGCGGAGCTCGATCTGACATCCAGGACATCGTTGCAGGCTTGGATGACTACCTACGCCCCATTATATCCCAGTTTGACTTCTCGTGCGTCAGGCTTCACACTCCACCCGTCTCCATCGCAGAGTCAGGGAAGGCCAAAGACAAGGACAGGGAGGAGAAACCGGCAGCAGATAAAGGCTTGCCAGGTGCGCCCGCTGACCCGGGGGAGGGTGTGTTCCTGCTGGCGGACGCGTGGCTCATGGAGTTTCCTCTGGAGGCACTGAGGGTCCTTCGGGACGAGGGCGTCAGTTCGGTGTCCAGGGATCCCTCTCTGCAGCTTCTGCATAAGCgcctgcagagagaggagggCGGTAAAGACAGCGCACTGAGAAGAGTAAAATGATAGGTTGGTTGACTGCGCTGAGGTGCGACACTGTCCCACAGGTCGGTGCCGCACTGAGGATGTGAAAGGGGTAAATGCTATAGTCTTCATGTGTAACCGCTAACCTTTTTCTGGATTTAAGACTTAAATATACGAATACAAGACACATTTGAATGTATCCAAATTATAACTGTTCCCTTACTTGCACTGTCAAAATAGATcctaaataaaatgctttgttg

Function

GO: NA

KEGG:

id description
K24938 CFAP46, TTC40; cilia- and flagella-associated protein 46

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174779 lncRNA downstream 229488 4075615 ~ 4076838 (-) True G138948
TU174717 lncRNA downstream 377708 3925167 ~ 3928618 (-) True G138906
TU174679 lncRNA downstream 928288 3376248 ~ 3378038 (-) True G138873
TU174584 lncRNA downstream 1193244 3060561 ~ 3113082 (-) True G138799
TU174507 lncRNA downstream 1585622 2720412 ~ 2720704 (-) True G138742
TU174869 lncRNA upstream 118866 4455792 ~ 4456002 (-) True G139024
TU174870 lncRNA upstream 129028 4465954 ~ 4466189 (-) True G139025
TU174871 lncRNA upstream 139538 4476464 ~ 4476663 (-) True G139026
TU174872 lncRNA upstream 158102 4495028 ~ 4495418 (-) True G139027
TU174873 lncRNA upstream 159236 4496162 ~ 4496362 (-) True G139028
AMCG00002844 mRNA downstream 7990 4282762 ~ 4298336 (-) True AMCG00002844
AMCG00002841 mRNA downstream 85265 4219176 ~ 4221061 (-) True AMCG00002841
AMCG00002838 mRNA downstream 270446 4034370 ~ 4035880 (-) True AMCG00002838
AMCG00002836 mRNA downstream 276331 4022581 ~ 4029995 (-) True AMCG00002836
AMCG00002837 mRNA downstream 289745 4008655 ~ 4016581 (-) True AMCG00002837
AMCG00002851 mRNA upstream 245656 4582582 ~ 4600633 (-) True AMCG00002851
AMCG00002854 mRNA upstream 341781 4678707 ~ 4714306 (-) True AMCG00002854
AMCG00002855 mRNA upstream 409821 4746747 ~ 4750268 (-) True AMCG00002855
AMCG00002856 mRNA upstream 413679 4750605 ~ 4754918 (-) True AMCG00002856
AMCG00002859 mRNA upstream 461661 4798587 ~ 4826031 (-) True AMCG00002859
TU174755 other downstream 303522 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 356158 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 1586907 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 3380928 923010 ~ 925398 (-) False AMCG00002752
TU174136 other downstream 3382092 923010 ~ 924234 (-) False AMCG00002752
TU175621 other upstream 2725547 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 3011885 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 3594331 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 4148435 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 4510106 8847032 ~ 8847840 (-) True G140006

Expression Profile