RNA id: AMCG00002846


Basic Information

Item Value
RNA id AMCG00002846
length 969
RNA type mRNA
GC content 0.48
exon number 8
gene id AMCG00002846
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4391354 ~ 4399257 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGGAAAATACGCTTCTCCGGGCTGAAGTAAAAGACGGGGAAATTCTGCCGCCAACGATCCAGAAGCTAATGAAAGGATATAACAAATACCTCCGACCATTTTTTGATAatGGACCTGTGACCGTGGGGATGAGTTTGGACATTGCAAGTATTGACACCATTTCAGAAATTAACATggACTACACTGCCACTATATTCCTGAGACAGCGCTGGACCGATGAGCGCCTGTGCTTTGATGGAAATAAGAGTTTGAGTTTAGATGGACGACTAGTTGAATTGCTTTGGGTTCCCGATACTTTCATCGTGGATTCGAAGAAATCCTTTCTTCATGACATCACCGATAACAACTACAGTGGCCTGCAATATGGACCTAACGAAATATCCGATGGACAAGCAGACCTCGGTCTGGACACACTGCGCCTGGCCCAGTACACCGTGGAGGATTACTACACTTCTGTCTCGGAAGCTATTTATGAAACAGGCCATTACCCCAAATTGATTTTCCACTTTGAATTGAAGAGGAGTATTCTGTATTTCATCCTGGAGACGTATGTCCCCTCCAGCCTCCTCGTTGTCCTGTCCTGGGTCTCGTTCTGGATCAGCCAGTCCTCAGTTCCAGCTCGGATCTGCATCGGGGTGACTACAGTCCTGACTATGACCACACTGATGATGGGAGCCAGGACTTCCCTGCCCAATGCCAACTGCTTCATCAAGGCCATTGACGTCTACCTCGGCATCTGCTTCAGCTTCATCTTTGGGGCATTGATAGACGAGAGAAAGCCCCAGCCCCCGGAGCAGCAGAGCGCCTGCTGCAAGACTCTCTACATCATCAAGAAGATCCTGTGTTTTCTGAACTGCTGCCGAGTGGAGAACCCCCACTACATAGACAATTACTCGCGGATGTCCTTCCCGCTCTCGTTCGTCCTCGTTAATCTGCTGTACTGGACAtattacctttatttttaa

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K05189 GABRP; gamma-aminobutyric acid receptor subunit pi

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174771 lncRNA upstream 314566 4072281 ~ 4076788 (+) True G138946
TU174763 lncRNA upstream 366609 4024442 ~ 4024745 (+) True G138940
TU174744 lncRNA upstream 401006 3989924 ~ 3990348 (+) True G138927
TU174713 lncRNA upstream 462700 3925169 ~ 3928654 (+) True G138905
TU174883 lncRNA downstream 184608 4583865 ~ 4584167 (+) True G139038
TU174889 lncRNA downstream 227400 4626657 ~ 4712825 (+) True G139044
TU174942 lncRNA downstream 399356 4798613 ~ 4802244 (+) True G139084
TU175041 lncRNA downstream 668215 5067472 ~ 5068895 (+) True G139170
TU175087 lncRNA downstream 840093 5239350 ~ 5239490 (+) True G139205
AMCG00002842 mRNA upstream 124115 4253759 ~ 4267239 (+) True AMCG00002842
AMCG00002840 mRNA upstream 204481 4162526 ~ 4186873 (+) True AMCG00002840
AMCG00002832 mRNA upstream 320079 4056439 ~ 4071275 (+) True AMCG00002832
AMCG00002831 mRNA upstream 338770 4043593 ~ 4052584 (+) True AMCG00002831
AMCG00002839 mRNA upstream 349953 4037710 ~ 4041401 (+) True AMCG00002839
AMCG00002845 mRNA downstream 51384 4450641 ~ 4466193 (+) True AMCG00002845
AMCG00002850 mRNA downstream 91970 4491227 ~ 4513971 (+) True AMCG00002850
AMCG00002848 mRNA downstream 121805 4521062 ~ 4522684 (+) True AMCG00002848
AMCG00002847 mRNA downstream 134529 4533786 ~ 4564541 (+) True AMCG00002847
AMCG00002849 mRNA downstream 169298 4568555 ~ 4574166 (+) True AMCG00002849
TU174764 other upstream 361430 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 795246 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 1275273 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 1896760 2492086 ~ 2494594 (+) True AMCG00002784
TU174215 other upstream 2981266 1407046 ~ 1410088 (+) False AMCG00002762
TU175054 other downstream 697474 5096731 ~ 5098744 (+) True G139176
TU175429 other downstream 1748491 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 2667686 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 2977430 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 3523925 7923182 ~ 7926832 (+) True G139784

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01180000_02452405_02470642.mRNA True 1902 mRNA 0.49 10 CI01180000 2452266 ~ 2470725 (-)