RNA id: AMCG00002847


Basic Information

Item Value
RNA id AMCG00002847
length 7318
RNA type mRNA
GC content 0.50
exon number 30
gene id AMCG00002847
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4533786 ~ 4564541 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGACAGGGAAGGGCTGGGAGAAACTGCGCAGACTGAGACACTGCGGTATGGCAGGGCCGGGGGGGCAGGCTCCTTGCACTTAAAACACAGGCTTGCGATTCAGTGCCATGGGGACTTTTGAGACGGCCGTGGCTGTGTAttatgaggaggaggaggaggaagaggagtacTATGACTTTGAGCCTCTGCCCACGCTGTTGGAGGATGAGGAAAACGTGTCCCTCGCGGATATCCTGTCACTGCGGGACAACTGTCTGGCGGAGCAGGAGATCTGGGCCGTGTGCCTGGAGTGCGCCCTGTCCCTGAAGTGTGTGGCCCACTCTGCCCTCTTCCACACGCTGTGCATCACCCCCGACACGCTGGCCTTCAACGCACATGGCAACGTGTGCTTCATGGAACAGCTGAGCGATGACCCAGAGGGTTCCTTTGTTCCTCCTGAGTTTGACAGAACAGGGAACACGTTTGAAGCACACGTGTATTCCCTGGGTTCGACCCTGACAGCTGCAGTGGAGTTTGTGATTGAGCCCGAGCTGGAGACGCAGCTCAGCCAAGATCTGAAGGTGCTTTTGCATCAGATGCAACAAGAGAATCCAGAAGATAGACCAAATATTGAGGATATTATTGCACTTGGGGAATTAAAGCTAAACCATTTGTCATCTGCCAGTATTTGTCGCAAACTTTCTGCCATAGGAAGAAGAGTGTTATCAATTGAATCAGTGGGAACATTTCAAGATGGGTGTGATAATTCGTGGAAAGTTATAGAGTCAAAGGCCGTGTTTGGACTCAAGCGGCAGGTTTTTGAACACAATCCAGCCGATGGATCCTCAAGCGACGAAGACCTGACTGCTGATCTGAATGTGTTAAACAATTGCATTGCAGGCACGACTGAAGGAAGTATGGCAACGCAAGATGCAGAAGAAGAGGAAGCTTTACTTCGAGATGAACTGACGGTGAATCATCTGGCTCAGAGGAATGGAGCTGAATGTACTTTTGAGCTGCGGTCCAAAAATGCGTCGACAAGAGTAGTACTGGCTGCACAAAAAACATCTCCAGTCAAGGAACCACGAGCAGAGCAACACCTAAGGACATTGTCCAGCCTGAATCGTCGCAGTCCCGTCTCCAACACCGGCGCTCTTCCGATTCTCCCATTCCACGTCCACAGAACTGTGTCCGTCACCGATCTCTCTGAAATAGCACCGGAGGAGAAAACGGTTACAGCGGCCGGTTCGTTTGAAAGTAACAATTGCAAACCGTCGTCTCAGTGTTCAAATATTCCCGAGCTCTTCTATTCCAACGATGACATGCATGTGGGTACTGTGGAGTCCCTGGAGTGTTCCCCGCTGCGGAACGGGAACAGTAACTCCTCGGCGAGACGCGGTGTCCCGAGCCTGATGGAGCTCAACACGAACACGGCCTCCACCCTGAAAACGGAGACGGCTGCTCTCAGGTCTTTCAGCGAAAGCTTGGTgaataacaatatatacagctctgacaACCACCGGACGAAAAGCATGCTCTGTCTTAACGAAGAATCTCAGGATGAATGGATCTCCCTGAAAGAGCTGCTGTCTCGCTGCGGCCGGCCGTTATCGGTTAACGagctgtgggctctgtgtcACGCCTGCCTCTCCACGTTGCAGACCTACATCGATTACCCAGCTGTCTTATGCTTGGACTCGGTGTATATTGGCTGTGAAGGGGAATTGCTGTTCTTGAACCCCAAAAACACAGGCTCCTGCGATGCGTTTTATTTGGCGCCAGAATTCCAGGAGCACGGAATTGTCACAGAAAAGGTGTGTGTTTACGGAGTGGCGGCTATACTCTGGGCTGCGGCGAAGTTTAACTCCTCGCCAAGCCGGAAGTTGGCTTTGCCGAGAAAGTTGAAAAGACTTCTTCTGGAAATGGCCAAAAGGACCCCAATAGAGAGACCCTCCATTGCTTCGGCACAAAAGCCACGCAGAGAAGATGTGGCCGAACCCCAGAGTGTGCTGGATAATGAGACGACATCTAATCAACAAGATTCTTCAAGTTTTAAAACTGGATTTGTGCCGATTGTTGCCGAGACCCGGCTGTCCGCGGTGCAAGGCCCGGTCCCTTGCGGTTTCCCTTCGAGCTGCTCCTCTCAGCTGCCCGCGGCCTACACCTCCCCCGCGACGCACTTCAAACCCATCATCCTGTCCCAGGACACAAAAGGATCTACAAATGAATGTACGAGTTCCAGTGCCAAACCACGTGGGAAAGCCACGCAACATGAAACAATACCAAAGAAGGGCCCGGTCGCTGCTAAAGATGTGACCCCAGAGGACAGGGAGCTCACCGATGCTTTAATACGGGGGGAATCGCACGGCAGCTCCTCCGTAGAAAATGACTGCTCTTCCACGTCTTCCAGTGGGAGAACGCTGATAAATTCCCCGTCTTTGGTGTCCCTCGTCTGCACCGAGCAGGAGAGGTTGCGCACCATGGACCCTGCACCTGTGGCGCGGCCGGCCGTTGCTCCGGCGATGTCTGATAACCCCATGGGTAATCGCTTTAATAACTTTCTCCTGAGACAGGATCCTAAAACCGGACTCCTGACGTTATTGCCGGTACAGATCGCTATTCCCGAGCCGATACCTGGCCTGGAGTTCGACACCGTCCCACGTCCAAGAAAGCCTCCAGACTCGACAGATGACGAGGTGTGGGGGCCCATGAACCAGAAGAGCGGGGTTTGTGACGCATCTGGTGACGACCCGAATCGTACGCCACGCGAGAGCGAGCGCCGGAGACACCGCAGCGCCGGCGCCGAGATCTCCGGGCCCCCGGCTTCTGCTCCGGTTGTTTCTCCGACACCAGACCGTTATGCCAAGCTGTCACCAAAGCCCCGCGGCAGTGGAGTAACGGAGGTGGACGAGAAGGTTAATTCCTCCAGAGGTTTCCCAGAGGACAAAGCTGTAAAGCATCTCCTGTCCTCTTCGTCTCTGTGCCAAATGAATGCGTGTCTGCTGAGTGTGGTGCATCTGATTAAAGAGGAGTTTGCGTTTGATGGCTATCTGGAAAACGGAGTTGAAGACCTTGCAATGGGGGAGTACATCTTATCGCTGAGGGATCTCCAGTACGCCACGTTCTGCAGCGCGGTGTCGGAGAAGTTCTGTGATCTGTACTGGGACGAGAGGCTGCTGGAGGCGCTCTACAAAGTGGTCAACGGGAAGCACGGTGGCCGAGGCGCTCTATCCTATTCAAAATCCCTGTCCAGCCTCGACCCTCCCGTCCAGTTCCCATCGAGGGTCAGTAAGAGGGCCGCGTCGCCTCCGAGTGGTCCGCAAAGACGCCTACGCCTGAAGGAAGTGCCCGAGCACTGGCAGTCGCTTCCGACTACCAGAGACACGGGTGTACAGGATGAGCAGAGCAGAGAGGGGGGAACTGCGTCTTTTGATCGTGCCAGTCCAGATTTAAATCCAGTGGACTGTCCTCAGACACCATTACTGAATGATAACTCAGAagGAAGAGGTGACCGTTCGCTCTCCGCCGCCGTGATCCTGAAATACCCCAGAGCCGATGACATGGACTCGAGTGACACCCCTCCCGACGGCGCAGACGAGACCCCCGCCGACTCTCCGTCGTTCTCCGCGAGGGAGGGCTGTTTCTCCAGCAGCGCCTTCTCCGTCCGGGGAGAGAGCCTGGATTACTCGGAGGACGACGACTCCCTGATCTCGGACAGGATGCCGGAGAACGGCCGCTCCCCGTCGCCCTTCCCGGGGGACCTGCGGAAGTGCAGTGCCGGGTGGGCCGTGGCTTTCTACGGTGAGGAGTGTTTCGGGGAGGACGTGCTGAAGTACGTGAAGAAACTCGGGAGACGCAACGACTCGAGGTGCATGGAGGCTAAAATGCTGGAGCTTCAGCAGCAACTGATGATGGAGACGAGGAATCTAAAGAAGACGAGGATTTTCTACCAAAAACTGCTTCACCAAGAGAGGAAGAACAAAGGTTCAGAAGCCAAAATCATGCTGCCCAAACTGAAAGCGCAGATGGAAGAGATGAGAACCAAAGTCGAATTTCTGAATTTAGTGAAAAAATATCTTGTGATCCTGTGTGTGGAGCAGTGGGGTCTGGAAGTGTCTCTCCTGCCCTCGCTGGCCCAGTCGGGGTCGGACTTGCTGGATCTGCAGCCGCAAGAAAGCTCTCCTCTGCTCAGTTTTCAACAAGGGACCGCAAGAGGAAAAAGCAGCCCaagcaaaatgaaaaccttGCAAGCTGGCACACCTCTGGGACTCATGTCATACCTCTTTGCCAGAAACGCAGCTCTGCAGGGTTACATTCAGCAGTTCCTTTACATCTTCCGGTATTTCTGCTCACCGGAAGAACTCTTACAGTTCCTGATTGATAAATGCACCAGTGCTGCCGGTGCAAATCAAGGGGGTTCTGCAGATCACAGGAAGGTATACAGCAGGAGTTTGGATGTGCTACAAGCATGGGTTGAAGACTGcaaacaaatagattttttacCCAAGTCCAGCCTGTTGCAGACATTGGAAGAGTTCATTATCTCCAAGGTGGTCCCATCGGACAGTAGGGGagagagcctgctggccttgaTACAAAGTGTCCCTCAGAGGAGGACGAGCTGTGCCGCCCCCTGCAGCTGTGACAGCGCTATGACCACGAATGACCGAGAGGACACCCGGTCGCTGACCTCGCTGTCCAGGAAGACGCCGGCGGACGATCCTGCCAGAAAGggCTTTCACTGGAGGATCTCCAAGGCGGCCGAGCCCCCGATGGTGCTGCAGAAAGACAAGGCCTATTCGATCGCAGCCGCCTTGCCAAAGCCCTGTTACTCCTCTCTAGTGGAGGAACTCGCCGTGTCGTGCTTGAAAATGGAGGACAAGAATCCTTTCTTTCAGAGTGAATACAGTGTGCAGCAAACAGCCCAGCAGCTCACCTTATTGCAACAGGAGATATTTCAAGGATGTCACCCGGTGCACTTCCTCAACTCCAGAGCTCTGGGAGTCAAAGACAAAACGATGAACATTACAAGGACCTTTTCGCCCGAAGCAGCCGAGGGCAGCAGCCTCTTCGCTCCGGTAGTGCCTCTGGACAGATCCTTACTCCAGCTGCTGAGATTCGCGGATAACGTCAGTAACTGGGTGTCTGCGGAGATTGTCATCGGTGACACGGTGAAGACACAGACCGGATTGCTCTCAAAATTTCTTCTCATCGCCAAGTTTTGTTACGAATCCAGAAATTTTGCCACAGCTATGCAGATACTTGGAGGattagaaaatgtaataGCGTGGAAGAACCTTTCGGCAAAAGTGTGTGACATTTTGGAAGAGCTGAGGGCAGTTCAGGTGTTTTTAAAGAGTGATAATCTGTGTTTAATGGAAGGAGAGCAATTTAAGAAACTCCCGACAATCCCTGCGGATCACGTACTGGCCATGCATGTCCAACAGCTGGAGATTGGTGCGTTCACGATGGCGAATGGAGCCTATAAGTGGCCCAAACTGAGgAACATTGCAAAGGTGGTCAGCCAGGTCCACGCCTTTCAGGAGAACCTGTACGCCTTTGTGCCCGACGTGGAGCTGCAGACCTACCTGAGGCACCGCGTCGCCCGTTTCAGCGACGCCGACATCCCCCTCCTGGCCGCGGAGAACAATACCAACTTCCACCAGATCCCCACCGACAAACACTCCCGCAAGATACAGGACACGCTGCGCAGGATGAAGGCGACGTTTCAGTGATTTTCTAGGGTAAGGGCTCACCGCctcatttattttgatctccAGCTTGGTGTTCAACACCCCGTTGACTTTTTCTCCCGTTTCTTGGCATGCACAGAGTGCTTTGAAAGCTGACCCTTCTCTGCTGCGTACAGAAACGTCTTCGGCATCCTTTGCCATACAATGAAACTGCTGCACAAATCCATTCACCGGGCTATGAGAAGTGGATCTCCCgaattgcaaataaaacaaaactgaaactgaaatctaTTATAATGATTCAGATCTGCCTGTGTATGTGGCTCCTCTCTCGGCTGTATCCATGTCAGTGAAGATCCGTACACAGACTTTTCGATGGATTTCAAATCTGCATGCGTTCAGACGTGTCCTTAAAACGCACGACTCCAAAGTGACAGCCGCAGGTTCGAAACTGAAAACCTAGTCCAGTTTCAAATGCTGGCTGACTCCCACCAGCTCTTGATACAGCAGTTTCCACCAAATCTGGGCCGTGGTTCAGAACGAAAACGCCTTCCCACCGCAGAGGACTGATATGAGTCACAGCAACAGCACACAGAAATGTCCTCTTTATTTTTGAGTTGTGGTAATAATACAAGGCCAAGTGAGTTTCCTTCCACCTAAATTGTAATCAAAAGTGTCTTTGAAGATAAATACTCAAATGAAAGATTACATTTGAGGCATTGTGCATCAATCTGTCAATCTTTCAATGCagtttaactttttcttttgagTACTGATTCTGGAAGGTTAAATGTGACTATTATATAACTGTACCATTGCATATTGGTCAGCAGTGCCAAATACGCTGCACATAGTTTATGCTTTAAACAATGAATTTGCTCTTGTAATCTGTATTCCTCCTTTGGGGTTTATATCTCATTTATTTCCTGGCATGtctcttgtgtgtttgtgtttaagaCTAAAAGACGTCTGCTGATTTCAGTAATACACACCACAGATAATGCTGGTAACACCGTGAGCTTATAAACGGTTTCATTTTCCGACTTAAATTGAAGACACTAAACTAACAACaagcaaacagaataaaacaccaGGGTGATGTctatcttttttaatttacaaatgcacTTTACTTTTCCTGGATAAATAGCCTTTCAGTTCTAAGGGGAATTTCTTCAGAGTAAACTGTGCAGAAAATACCATTAATTGCCAATGTGTGGAGGTAGAAATCTACATTGAAATGGTAGTATGGAGTGGAGAAATGTGTTTCTCACTAAAGCCAAGTTTTAGACAAACAAAGATGTCTCTAGATGAGTGGCAGATCGTTAGTGGTACCCTTGAATTTGGAGTACAAATaagcagatttaaataaatgcactatactgttttaaacttaaattcTATAAGTTTTCTTTGAATGCTGCTAAAGggtaaatgtttaatgtgtgtgtataggatatggtaaataattaaatatgttttcactTCAGTTCCTAACATGAATACGAGTTAAACAAATATTAGcaaaaattaccaaaataactGTGTAGTACttacaatgtgtatttttctaaCATGTCTCTGAACTAAAGGGtgtattgcaaaatatatttttaaaaataaataaataaaaatattcatcAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174771 lncRNA upstream 456998 4072281 ~ 4076788 (+) True G138946
TU174763 lncRNA upstream 509041 4024442 ~ 4024745 (+) True G138940
TU174744 lncRNA upstream 543438 3989924 ~ 3990348 (+) True G138927
TU174713 lncRNA upstream 605132 3925169 ~ 3928654 (+) True G138905
TU174883 lncRNA downstream 19324 4583865 ~ 4584167 (+) True G139038
TU174889 lncRNA downstream 62116 4626657 ~ 4712825 (+) True G139044
TU174942 lncRNA downstream 234072 4798613 ~ 4802244 (+) True G139084
TU175041 lncRNA downstream 502931 5067472 ~ 5068895 (+) True G139170
TU175087 lncRNA downstream 674809 5239350 ~ 5239490 (+) True G139205
AMCG00002848 mRNA upstream 11102 4521062 ~ 4522684 (+) True AMCG00002848
AMCG00002850 mRNA upstream 19815 4491227 ~ 4513971 (+) True AMCG00002850
AMCG00002845 mRNA upstream 67593 4450641 ~ 4466193 (+) True AMCG00002845
AMCG00002846 mRNA upstream 134529 4391354 ~ 4399257 (+) True AMCG00002846
AMCG00002842 mRNA upstream 266547 4253759 ~ 4267239 (+) True AMCG00002842
AMCG00002849 mRNA downstream 4014 4568555 ~ 4574166 (+) True AMCG00002849
AMCG00002853 mRNA downstream 170133 4734674 ~ 4748141 (+) True AMCG00002853
AMCG00002852 mRNA downstream 198600 4763141 ~ 4767676 (+) True AMCG00002852
AMCG00002858 mRNA downstream 210830 4775371 ~ 4796304 (+) True AMCG00002858
AMCG00002861 mRNA downstream 286249 4850790 ~ 4867571 (+) True AMCG00002861
TU174764 other upstream 503862 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 937678 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 1417705 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 2039192 2492086 ~ 2494594 (+) True AMCG00002784
TU174215 other upstream 3123698 1407046 ~ 1410088 (+) False AMCG00002762
TU175054 other downstream 532190 5096731 ~ 5098744 (+) True G139176
TU175429 other downstream 1583207 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 2502402 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 2812146 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 3358641 7923182 ~ 7926832 (+) True G139784

Expression Profile