RNA id: AMCG00002854


Basic Information

Item Value
RNA id AMCG00002854
length 1359
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00002854
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4678707 ~ 4714306 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTCACGTTCCCATTCGGCCACCGATTAAGAAAAGGCAGAAACCGAACGACTCCTGCAGTTCGTGTCAGTATGAGGTCAAGTTCGGCGAAGTGGTGATTTTTCTCGTGGAGAGAAAGATGGGGGCAAGCAGAAGGAGTTTTCTAACCAGTCTAGCGAGGAAGAAGGGGTTCAAAGTAGAGGATGTGTTAAGCAATGCCGTCACCCACGTTGTGGCCGAGGCCAACTCCGCAGGCGAGCTCTGGCCGTGGCTGGAGAACAGCAGCCCAAGGGTCCTGCCCGAGACGGAGGTGCTGGACATCTCCTGGTTCACTGAGTCCATGGCGGCGGGAGAACCTGTTCATGTGGAGGCCAGACATCGGCTGGTGgaaAACAGCCCTTTGATTGAAGAAAGCCCACAGCCCTCTGCATTTGGGACCATATCTCACTACTCTTGTCAGAGACGGACAACCATGGAGAACCACAACAAAGTATTCACGGACGCATTTGAGATCTTGGCGGAAAATTACGAGTTCAGCGAGAGCGAGGGACCCTGTCTGGCCTTCTTACGGGCGGCTTCGCTGCTGAAATCCCTGCCGCACACTGTCCGCTGCCTGGGAGACCTGCAAGGCCTGCCGTGTCTGGGAGACCAAACAAAAGCTGTCATCGAGCTGTTTACAGGTGTTTTTGGGGTTGGACTGAAAACGGCAGAGAAATGGTACCGGAAAGGATTTCGCTCCTTTGAAGACGTACAAACTGACGACACCATCCGTTatacaaaaatgcagaaagcaGGCTTTCTGTACTACAATGATATTTTTGCCGGTGTCAGCAAAGCAGAAGCCAATGCAGTCGGGCAGATCGTAGAGGACATTGTTCGCCGGCTCGAACCTGACGCTATCGTGGCACTGACGGGTGGCTTTCGAAGAGGGAAGGAGTTCGGCCATGATATTGATTTTCTGATCACCACTCCAGAGACGGGGAAGGAGAAGGGACTTCTGAATAAAGTAATTAATGAACTGAAAAATCAGGGCATTCTGCTGTATTACGATATTGTAGAATCAACGTTTGACAACACCAGACAGCCGAGCAGAAATTTCGAGGCCATGGATCACTTTGAGAAGTGCTTCTTGATGATGAAACTGAAGAAGTCGCTTGTGGACGGTGCGAGGCAGAGGGATTGTGTAGATTGTAAAGACTGGAAAGCCATACGGGTGGATTTCGTCCTTCCCCCTGTGGACCATTTTGCCTTTGCGCTCTTGGGTTGGACGGGCTCAAGGCTTTTTGATCGAGACCTGAGGAGATACGCCCGTTATGAGAGGAAGATGTTGCTGGATAATCACGCCCTCTATGACAAGACTAAGGTCTTAAAAGCCTGA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016779 nucleotidyltransferase activity molecular_function

KEGG:

id description
K00977 DNTT; DNA nucleotidylexotransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174884 lncRNA downstream 94535 4583865 ~ 4584172 (-) True G139039
TU174874 lncRNA downstream 167400 4507504 ~ 4511307 (-) True G139029
TU174873 lncRNA downstream 182345 4496162 ~ 4496362 (-) True G139028
TU174872 lncRNA downstream 183289 4495028 ~ 4495418 (-) True G139027
TU174871 lncRNA downstream 202044 4476464 ~ 4476663 (-) True G139026
TU175135 lncRNA upstream 682033 5396339 ~ 5396559 (-) True G139249
TU175433 lncRNA upstream 1443437 6157743 ~ 6158763 (-) True G139496
TU175564 lncRNA upstream 1767961 6482267 ~ 6510125 (-) True G139593
TU175618 lncRNA upstream 2287359 7001665 ~ 7073536 (-) True G139639
TU175655 lncRNA upstream 2504563 7218869 ~ 7219192 (-) True G139668
AMCG00002851 mRNA downstream 78074 4582582 ~ 4600633 (-) True AMCG00002851
AMCG00002843 mRNA downstream 341781 4306326 ~ 4336926 (-) True AMCG00002843
AMCG00002844 mRNA downstream 380371 4282762 ~ 4298336 (-) True AMCG00002844
AMCG00002841 mRNA downstream 457646 4219176 ~ 4221061 (-) True AMCG00002841
AMCG00002838 mRNA downstream 642827 4034370 ~ 4035880 (-) True AMCG00002838
AMCG00002855 mRNA upstream 32441 4746747 ~ 4750268 (-) True AMCG00002855
AMCG00002856 mRNA upstream 36299 4750605 ~ 4754918 (-) True AMCG00002856
AMCG00002859 mRNA upstream 84281 4798587 ~ 4826031 (-) True AMCG00002859
AMCG00002860 mRNA upstream 123414 4837720 ~ 4847720 (-) True AMCG00002860
AMCG00002865 mRNA upstream 164971 4879277 ~ 4906202 (-) True AMCG00002865
TU174755 other downstream 675903 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 728539 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 1959288 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 3753309 923010 ~ 925398 (-) False AMCG00002752
TU174136 other downstream 3754473 923010 ~ 924234 (-) False AMCG00002752
TU175621 other upstream 2348167 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 2634505 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 3216951 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 3771055 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 4132726 8847032 ~ 8847840 (-) True G140006

Expression Profile