RNA id: AMCG00002867


Basic Information

Item Value
RNA id AMCG00002867
length 3846
RNA type mRNA
GC content 0.52
exon number 15
gene id AMCG00002867
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5012179 ~ 5024583 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCACGCCGGAGTCTGGGAAGCACAGTATGATTTTGGAGATGTTTCTGTTCGAGTTCAACCATTACACCGTGCTGGCCACCGTCCTCACATCTGTGCTGTCcgtcctgctgctgctgactgCAACCCGCCAGCTGTGGACATTGCGATGGACCATGACCAGGGACAGAGACTCTCCGCTGCCCCTTCCCAAGGGCTCCATGGGCTGGCCCCTCTTTGGAGAGACTTTCCACTGGCTACTTCAGGGCTCCAGATTTCACATCTCCAGGAGAGAGAAGCACGGAAACGTCTTTAAGACCCACCTTTTAGGGAAGCCTGTTATCCGTGTGACAGGGGCTGAAAACATCCGTAAAATCTTGCTTGGAGAACACAACTTAGTGAGCACACAATGGCCACAAAGCACACGGATCATCCTGGGAGCTCACACGTTGGTCAACTCTGTTGGAGACCTTcataaacagaaaagaaaaATCCTGACTAAGGTGTTCAGCCGCGCTGCTCTGGAGACGTATGTGCCTCGTTTGCAGGACGTGGTGAGGGCTGAGGTTGCCAAGTGGTGCTCGGACCCGGGCTCCATCAACGCCTATACCTCGGCCAAGGCGCTCACTTTCCGCATCGCTGTGCGCGTCCTCCTGGGGCTGCGGATCGACGAGCGCCGGTTCAACTACCTCTCCAAGACCTTTGAGCAGCTCATGGACAACCTCTTCTCGCTCCCTCTAGACGTGCCCTTCAGCGGGCTTCGCAAAggTATGAAAGCTCGAGATATACTGCACGAATGCATGGAGAAAATCATTGAAGAGAAACTCCAAAAAAAACAGACCGAGGAACACAGCGACATATTTGATTACATGCTGGGCAGTGCCAAGGAGAACGGATATGAGATAAGCATGCAGGAACTGAAGGAGAGTGCCGTGGAGCTCATCTTTGCGGCCCATTCCACCACCGCCAGCGCCAGCACGTCTCTCATCCTGCAGCTGCTCCGGCATCCTTCAGTGGCGGAGACGGCCAAAGCGGAGCTGGAGACCCAGGGACTTAACTGGGGCATTCACCGGCCGCAGTGCCCGGCCTGCAAGGAAAGGAGCTCCAGTCAGGCCCCAGAGTCAAAGGAAGAGCCAACGACAAATGGAAAGCACGGAGACTGGAGTTTAAGAACAGACACTGCAGTTCAGAAAACCTTGAATGATAACATGGGAGCCGGTTACTGTGACTCGGAGGGAGAAAACTTCTGCCGCCATTCGCACTATTTGAGTCTGGAGAAACTGAGCGGGCTGCGTTATCTGGACTGTGTGGTGAAAGAGGTGCTCAGGTTTCTGCCCCCGGTGTCAGGGGGTTATCGGACTGTACTGCGCACTTTCGAGTTACAGGGCTATCAGATTCCCAAAGGCTGGAGTGTGATGTACAGCATCCGGGACACCCATGAGACTGCGGCGGTGTTTGAGCGCCCGGAGATGTTCGACCCGGAGCGCTTCGGACCCGAGAGGGACGAGAGCAAGGCCGGCTCCCGCTTCAGTTTCATCCCCTTCGGCGGGGGAATCCGGAGCTGCATCGGGAGGGAACTGGCGCAAATCATATTAAAAACTCTGGCTGTTGAGTTACTCAACACTGCCAAGTGGGAACTGGCCACGGCGACCTTTCCAAAAATGCAGACAGACAGATCTCACAGCGGATCTCATGAGGCCCCGACAGGACGACAGTCGTTGAACTTGGCGAGGTTGGCGCCAGAGGTCACACAGAGGTCGCGGGCCGTGCGGGAGGTCAGCGGCAGAGTCCAGCAGCGGCTCGTCCCGGGCACTGCGGTCAGCATGGTTTTGTACACACTGTGCGCCACGTTTCTGTGCACCCTTGTGCTCCCGCTCCTGCTGTTTCTGGCAGCAGTGAAGCTCTGGGAGATTTACATCATCAGTGGACGAGATCCAAACTGTGCGAGTCCTCTCCCTCCGGGTACCATGGGGCTGCCCTTCCTCGGCGAGACTCTGCAAATGGTCCTGCAGAGACGGAAATTCCTGCAGATGAAGCGCCAGAAATACGGCTTTATCTATAAAACGCACCTCTTCGGCAACCCCACGGTGCGGGTCATGGGCGCTGAAAACGTCCGTCAGATCCTGCTGGGGGAGCACCGGCTGGTGGCGGCGCAGTGGCCGGCCTCGGTGCGCACCATCCTGGGCGCAGACACGCTGTCCAACATGCACGGCGCGCAGCACAAACTCAAGAAAAAGGCGATCATGAAAGCTTTCTCCAGGGAAGCCCTTGAGCACTACATCCCGGTGATCCAGGAGGAGGTGCGCTGCGCCGTGGCCGGCTGGCTCCAGAGCGACTCCTGCGTGCTGGTGTACCCCGAGATGAAGCGGCTCATGTTCCGCATCGCCATGAGGATCCTGCTCGGCTTTGAGCCCGAGCAGACCCGGACTGACGAGCTGGAGCTGGTGGAGGCGTTTGAGGAGATGATCAAGAACCTCTTCTCCCTGCCCATCGACGTCCCGTTCAGCGGCTTGTACCGGGGGCTCAAGGCTCGCAATTTCATCCATGCCAAAATTGAAGAAAACATCAAGAAGAAGATTGTGAAGCGGCTGGACCAGGCGCAGCACATGGATGCGTTGCAGCTGCTCATCGAAAACTGCAAGAAAAACGGAGAGCCCCTCGGCATCCAGGAGCTTAAAGAGTCGGCGACCGAGTTGCTGTTTGGGGGACATGAGACCACCGCCAGCAGCGCCACATCGCTGGTGATGTTTCTGGGGCTGCATCCGGAGGTGGTGCTGCGGATGAGGCAGGAGCTGCACGCCAAGGGTTTATTGGGGGCTAATTCACAAGACAAAGCTTTGAACATCGAGACGCTTGAGCAGCTGAAGTACACTGGGTGTGTTATCAAAGAAACGCTGAGGATAAACCCATCTGTCCCGGGGGGCTTTCGAGTGGCTCTCAAAACCTTTGAGCTGAATggCTACCAGATTCCTAGGGGATGGAACgtcatttacagcatttgtgACACACATGATGTTTCAGACATGTTCCCCAACAAGGAGGAGTTTCAACCTGAGCGTTTCATGGCAAAAGCCCCAGAAGACTCATCCAGGTTTAATTACATACCCTTTGGTGGAGGCTCCAGGAGGTGTGTGGGCAAAGAATTTGCAAAGGTCGTCCTCAAGATATTTTTAGTGGAGCTGGCAACAAAATGCAACTGGACACTCTTGAACGGACCCCCTACAATGAAAACCGGCCCAACGGTTTACCCAGTGGACAATCTGCCCACAAAGTTCAGTAGTTTTGTTGACACTTACAATTAACCCCctccgaaaaaaaaaaaaaaaaaactgttagcatttacattgtaaatagacttttgtattaattttaggTCAAACATAAGTTTTGCGTTTTATATCTgacttgtatatttttaatacaatagatatgtatataaacccctttaatatttttgtaaagaaaaacaactttctAAGCACTATATATGCATGGATCCAAGTGGTTCATAATTGTTGacaaataacttttatttaaagtgacaaAGCTGTACATGTAGTCATGTCATATTTAGACACTTTTCTACTTTTAATGCAActtatttaaactaaacaatTATTGTATGggacttatttaaataaaatatttttgaaaaaaaaaaaacttaacagGGAAATATGATTGAACTTTAAATTTgttaaatatagtttatttgtatgttaagCAATATGTTTGCCACCAGCAAACCTGAGATGCCTGTgctaatgtgtgttttaaagaagCATGGCACGGCATATTCAGCCTGCACTGCAGCCTGTACTTTCAATgggctttttcattttaaataaagccaGACGTTTTTCAAA

Function

GO: NA

KEGG:

id description
K07437 CYP26A; cytochrome P450 family 26 subfamily A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174942 lncRNA upstream 209935 4798613 ~ 4802244 (+) True G139084
TU174889 lncRNA upstream 299354 4626657 ~ 4712825 (+) True G139044
TU174883 lncRNA upstream 428012 4583865 ~ 4584167 (+) True G139038
TU174771 lncRNA upstream 935391 4072281 ~ 4076788 (+) True G138946
TU174763 lncRNA upstream 987434 4024442 ~ 4024745 (+) True G138940
TU175041 lncRNA downstream 42889 5067472 ~ 5068895 (+) True G139170
TU175087 lncRNA downstream 214767 5239350 ~ 5239490 (+) True G139205
TU175122 lncRNA downstream 341852 5366435 ~ 5366683 (+) True G139238
TU175151 lncRNA downstream 415194 5439777 ~ 5442279 (+) True G139263
TU175250 lncRNA downstream 793469 5818052 ~ 5819125 (+) True G139351
AMCG00002866 mRNA upstream 3434 4963957 ~ 5008745 (+) True AMCG00002866
AMCG00002864 mRNA upstream 59774 4952100 ~ 4952405 (+) True AMCG00002864
AMCG00002862 mRNA upstream 78974 4928430 ~ 4933205 (+) True AMCG00002862
AMCG00002863 mRNA upstream 93658 4908501 ~ 4918521 (+) True AMCG00002863
AMCG00002857 mRNA upstream 134843 4874883 ~ 4877336 (+) True AMCG00002857
AMCG00002868 mRNA downstream 128721 5153304 ~ 5187446 (+) True AMCG00002868
AMCG00002871 mRNA downstream 207399 5231982 ~ 5233827 (+) True AMCG00002871
AMCG00002872 mRNA downstream 252332 5276915 ~ 5285072 (+) True AMCG00002872
AMCG00002881 mRNA downstream 356030 5380613 ~ 5383693 (+) True AMCG00002881
AMCG00002882 mRNA downstream 359269 5383852 ~ 5386429 (+) True AMCG00002882
TU174764 other upstream 982255 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 1416071 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 1896098 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 2517585 2492086 ~ 2494594 (+) True AMCG00002784
TU174215 other upstream 3602091 1407046 ~ 1410088 (+) False AMCG00002762
TU175054 other downstream 72148 5096731 ~ 5098744 (+) True G139176
TU175429 other downstream 1123165 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 2042360 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 2352104 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 2898599 7923182 ~ 7926832 (+) True G139784

Expression Profile