RNA id: AMCG00002871



Basic Information


Item Value
RNA id AMCG00002871
length 1293
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00002871
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5231982 ~ 5233827 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGATGACAGCCAAAACTTTGGAGAAACCCCCCGCGACGCTCAGTGGTTTTGTGCACCCTCTTTCAGAAAACATCTACTCCGTGGACGAGATTGGCACAAGCCTGTCGACCTCGGTGGCAATCTTCCCTAATGCCGATTTAGGAGGACATTTCGACCACATTAGTGGAGTTTCAGGAGATGGCATGATCAATGGGGACATGAGCACGGACAAGCGCTCCCTCGACTTGTCCTACTCCAGCAGCTTCTCACAACCCTGCGCGCCCCGCAACCAGACTTTCACCTACATGGGCAAGTTCTCCATCGACTCTCAGTACCCAGGTGGCAACTGGAACCCGGAGAGTGTGATCAACATCGTCAGCGCCGGGATCCTGGGCATGACCCAGCCGCCCTCCTCGTCCTCGTCGCCGGCTTCTTCTTCAGTCTCCCCGAACCACTTCGCCAGCTCTCTGAGCTGCACCATGGCGCAGAACCAGCCCGACATGGATCACATCTACTCTCCACCTCCTCCTTATTCGGGCTGCGGGGAGGTCTACCAAGACCCGTCTGCCTTTCTTTCCACGTCTACCTGCCCCATTTCCTACCCTCCACCTATCTACTCCTCGCCCAAGCCGAACACAGACAGCGGTCTCTTTCCCATCATCCAAGACTATGCCAGCCTGTTTCAGCCTCCGTGCCAAAGAGACATCCAGTCGGTCCCTGACCGCAAGCCCTTCCCATGCCCACTAGACTCCATCAGAGTCCCCCCACCTCTCACCCCTCTCAACACTATACGGAACTTCACTTTAGGGGGGCCGACTACAGATGGACCCAGACTACCCACCGCTTACAGCCCCCAGAATTTACCCCTGAGACCTATCTTGCGGCCACGGAAATACCCCAACCGCCCCAGCAAGACCCCCGTTCATGAGCGGCCGTACCCCTGCCCGGCAGAGGGCTGCGACAGGAGGTTCTCCCGGTCCGACGAGCTGACCAGACACATCCGCATCCACACCGGGCACAAGCCCTTCCAGTGCCGCATCTGCATGAGGAATTTCAGCCGCAGCGACCACCTCACCACTCACATCCGCACCCACACCGGCGAGAAGCCCTTCGCCTGCGACTTCTGCGGCAGGAAATTTGCCCGCAGCGACGAGCGAAAGAGACACACGAAGATCCACCTCCGGCAGAAGGAGAGGAAATCGTCGTCCGCCGCGGCTCCCGGCAGCTCGGAGCGGTGCGCTGGCGCATCATCCGGGGCGGCGTGTCCTGCGGGCGGCGGGCAGCTCTCTGCGTGTCCGTCCAGGGCGGTGTAA

Function


GO:

id name namespace
GO:0048168 regulation of neuronal synaptic plasticity biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0071320 cellular response to cAMP biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0071371 cellular response to gonadotropin stimulus biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0021654 rhombomere boundary formation biological_process
GO:0035914 skeletal muscle cell differentiation biological_process
GO:0048932 myelination of posterior lateral line nerve axons biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K12496 EGR2; early growth response protein 2

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU175041 lncRNA upstream 163087 5067472 ~ 5068895 (+) True G139170
TU174942 lncRNA upstream 429738 4798613 ~ 4802244 (+) True G139084
TU174889 lncRNA upstream 519157 4626657 ~ 4712825 (+) True G139044
TU174883 lncRNA upstream 647815 4583865 ~ 4584167 (+) True G139038
TU174771 lncRNA upstream 1155194 4072281 ~ 4076788 (+) True G138946
TU175087 lncRNA downstream 5523 5239350 ~ 5239490 (+) True G139205
TU175122 lncRNA downstream 132608 5366435 ~ 5366683 (+) True G139238
TU175151 lncRNA downstream 205950 5439777 ~ 5442279 (+) True G139263
TU175250 lncRNA downstream 584225 5818052 ~ 5819125 (+) True G139351
TU175425 lncRNA downstream 904294 6138121 ~ 6140671 (+) True G139488
AMCG00002868 mRNA upstream 44536 5153304 ~ 5187446 (+) True AMCG00002868
AMCG00002867 mRNA upstream 207399 5012179 ~ 5024583 (+) True AMCG00002867
AMCG00002866 mRNA upstream 223237 4963957 ~ 5008745 (+) True AMCG00002866
AMCG00002864 mRNA upstream 279577 4952100 ~ 4952405 (+) True AMCG00002864
AMCG00002862 mRNA upstream 298777 4928430 ~ 4933205 (+) True AMCG00002862
AMCG00002872 mRNA downstream 43088 5276915 ~ 5285072 (+) True AMCG00002872
AMCG00002881 mRNA downstream 146786 5380613 ~ 5383693 (+) True AMCG00002881
AMCG00002882 mRNA downstream 150025 5383852 ~ 5386429 (+) True AMCG00002882
AMCG00002880 mRNA downstream 184848 5418675 ~ 5435914 (+) True AMCG00002880
AMCG00002888 mRNA downstream 303663 5537490 ~ 5616805 (+) True AMCG00002888
TU175054 other upstream 133238 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 1202058 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 1635874 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 2115901 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 2737388 2492086 ~ 2494594 (+) True AMCG00002784
TU175429 other downstream 913921 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 1833116 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 2142860 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 2689355 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 2803750 8037577 ~ 8044220 (+) True AMCG00002965

Expression Profile