RNA id: AMCG00002875


Basic Information

Item Value
RNA id AMCG00002875
length 912
RNA type mRNA
GC content 0.61
exon number 4
gene id AMCG00002875
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5262750 ~ 5276075 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATGACGTCCCCAGCGTGCAGGCCTTCAGTGAAATGCAGCAAAAGTTATACGAAGGAAAGAACCCCCTTTGCAAAGAGGCCCCAGAGCCACGCAGTGCCCCATCACAGCTGCCTTTCCGGTGCCCGCGGTGTGGTGAACACGAGAGGTTCAGAAGCCTGTACTCGCTGAGGGCTCACCTGGAGTATGGGCACAGCTACCAGACCATGCACAACACCAGCTCAGCCTCTCCAGGGTCCACCGAGAACGTCCTGCTGGACAACAAGGAGTCCACAGACACAGGCTGCGGGGAGAAATGCAAAGGCTCAGCGGTGGACAATGCTGGAAAAAGGAATGTCAGGTTTAAGGACGGCAGAGAGACGGCCAACTCCCCCAGCCCCTGCGAGGAGTCGAACCCAGAGCCCCACGGCAGCGGGGGCAGCTCCGAGGGCCAGAGCAGCGGCCCGGCGTCCACGGTGTCCATCGAGGCCCACGTGCGGCGCCGGCTGGAGGAGATGCTGCAGGCGGCGGACAGCAGCATGGAGAGGCGTCTGCGCAGGGTGAGCAGCGAGCTGGCGCACACGGACTCGGAGCTGCTGCGCACGCAGGCCCAGTCCCGGCACCTGGCCCAGGAGCGGCAGGAGCTGTTCGAGCGGGAGAGGGCCCTGAGCCGCCAGGTGGACGCGGCCGTCACAGTCATTGCAGCCCTCCGGCAGCAGCTGACCGAGGAAGTAATCAGCATTCATCACTTTCTGGAAGCGGCCGTTCATCATGAAGTCTGTGGGAAAGTTCGACTCCAGCACTTCATAGAGAATCTCTTGCGACGGATAGCCCTGGCAGAGAAGCTCTTGGAGTATTATCAATGTGCTTCCAGTCGGCCCAACTGCAGAACACACACTGTTGCTGTCATACCGTCACAGGTCCTGAATTAG

Function

GO: NA

KEGG:

id description
K16737 ZNF365, Su48; protein ZNF365

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174884 lncRNA downstream 678578 4583865 ~ 4584172 (-) True G139039
TU174874 lncRNA downstream 751443 4507504 ~ 4511307 (-) True G139029
TU174873 lncRNA downstream 766388 4496162 ~ 4496362 (-) True G139028
TU174872 lncRNA downstream 767332 4495028 ~ 4495418 (-) True G139027
TU174871 lncRNA downstream 786087 4476464 ~ 4476663 (-) True G139026
TU175135 lncRNA upstream 120264 5396339 ~ 5396559 (-) True G139249
TU175433 lncRNA upstream 881668 6157743 ~ 6158763 (-) True G139496
TU175564 lncRNA upstream 1206192 6482267 ~ 6510125 (-) True G139593
TU175618 lncRNA upstream 1725590 7001665 ~ 7073536 (-) True G139639
TU175655 lncRNA upstream 1942794 7218869 ~ 7219192 (-) True G139668
AMCG00002873 mRNA downstream 21244 5240760 ~ 5241506 (-) True AMCG00002873
AMCG00002874 mRNA downstream 66057 5190120 ~ 5196693 (-) True AMCG00002874
AMCG00002870 mRNA downstream 172348 5068445 ~ 5090402 (-) True AMCG00002870
AMCG00002869 mRNA downstream 202202 5054132 ~ 5060548 (-) True AMCG00002869
AMCG00002865 mRNA downstream 356548 4879277 ~ 4906202 (-) True AMCG00002865
AMCG00002876 mRNA upstream 13605 5289680 ~ 5297202 (-) True AMCG00002876
AMCG00002879 mRNA upstream 28836 5304911 ~ 5315169 (-) True AMCG00002879
AMCG00002878 mRNA upstream 71368 5347443 ~ 5354987 (-) True AMCG00002878
AMCG00002877 mRNA upstream 90740 5366815 ~ 5379558 (-) True AMCG00002877
AMCG00002883 mRNA upstream 162305 5438380 ~ 5443809 (-) True AMCG00002883
TU174755 other downstream 1259946 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 1312582 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 2543331 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 4337352 923010 ~ 925398 (-) False AMCG00002752
TU174136 other downstream 4338516 923010 ~ 924234 (-) False AMCG00002752
TU175621 other upstream 1786398 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 2072736 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 2655182 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 3209286 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 3570957 8847032 ~ 8847840 (-) True G140006

Expression Profile