RNA id: AMCG00002877


Basic Information

Item Value
RNA id AMCG00002877
length 1903
RNA type mRNA
GC content 0.42
exon number 8
gene id AMCG00002877
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5366815 ~ 5379558 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCATGGACGGCCCTGCAGCCCCCGCCAGCGACAGGAGGCCGACTGCGGCTCATGCTAAAGATGCCAGTGAAAGGGGACCCCTGCCTGAAACAATCCTGTCTTCTGCACAGATTACCGTGCTGTTGACGCTGAGTGTTGAGGAAGTGCAAAAAAAATTGGAAGAGATACTCGGATTTGAAAACCATCAGACATGCTTGAAGGAAGCCTCTTTATTGGATTTCTACGTCTCTGGGTTCTGGTGGGCAAAAGAAATGAACTTCACGGTCCAGCAAATATCGGCCTTCATGACTCTCCAACACATGGTATTGGAAAATATCAAGGACAAACAGATGCCCTTAGTGGATAACTTCAAAGAGTTTGCAACGGCGCTGGCAGAAACTGGGCAGGTGGCTTTGTCAAAGAAGGAGGGAGATGAATTCTTCAGCCTGGCACAAGCTACGTCTATCACTGACTACTTCAGGTCCAGtGTGTTTCAACATTATAAACTGTATGAATTTCTCTTTAAACATCCAAGAGAGGAACTCATCGTGGGCATTGAAGAAGATATCGAAGTGATCGGATCTGGAGAGAGCCTGTTTGTGGCACCTTTGGAAGAAGGCATGTCCTCGGACATCTTCTCTCGCTATGTGGTCCCACAGCCAGCCGAAGAGAACACAGACGAGCTATCGGCAGAACTGGTTAAAGAACCGAGAGGAGACCGGGAAGAGACACAGTCTGGAGCTGACACTGAAGTAACGGATCCCCATGAAGGGTTCGCTGTAGAAGAAGTGAGATCGGTGCTGGGGCATCTGACGGGAGATGCGCTCGGGAGTCTGCAGATGGAGATCAGTGAGAGGTTGCGAGTCCAGGAGGAAACCTACGCTGCTAGAATAGATCGACTTAAAGAGTCTTAAGCCCATTCGAGATGCTGCAGGGAAACAAAACATCGTGCCCCGAAACCGAATATTTTGTCAGCAATTGTTTCTTTTATAATGATTTGCTAGTTATAAAGCTTACAGAAttcatttagctttttttaaacggtacctttttaaaatattcaggcAGTTctccaaaaaagaaataaagaatgaacaTACAATCCAGTTTAGAAAGATTAAGAGTACATTTGAATCAATCAAAAATGAAAGGAATGTAAAACTAagcctttaaaatgtgtgaaacatACCACCGAAAAAGTCAAACCAAATAAAACCTGCCTTTCACTGTGTTAGCCAACCTTAAATCCTCCTAAGATGCTTGCACACTGTTTACACTAATAATTTCTGGTAAGTCATTAACGGTCTTAAAAATGCACAGCTGCTATTGCAACCCGGTGTGTGTAACTCACAGCCTAAACAGTTGATTCAGCCTTTAGCTCggtatttaaacaatgtactgCAAACATTGTAAATGGCTAAGGGAAAAGAGCAAGGTTGataaaaatgtttaactttGTTATTATATCTTTTGTACCCCCAGTAAATGAAGCGGTTCATATTTACCAGCTCTGGGTAACAgactttgtgttatttttctttcctcctgtACTGTGAAGGGGATTGGAGAAACTTTCCAGCTGTAAACATGGCAGACTTATATTGGACTTCATTTACACAAAGAACCCGTTTCTTATAGTCtgtgaaaaaaatctaaaccaatatcagaaaataaatatttgtttgagtatactttttattataagtaaataaaacaacccaTGTGCACTACGGCTGCTTATtaactttaatatatttccctcCACTATTGTCATGTGTTTGCAATAGGAGTACTGCCGGGGGGCGAGTGAGTTAACCACCATTACTCACGTTTTAAGGGGACATTTACAAGATATGAACATGTTAGGAGCCGACTGTATTGGGCCTTACTGATTGatggtttcatttgtgaaccaAATGTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174884 lncRNA downstream 782643 4583865 ~ 4584172 (-) True G139039
TU174874 lncRNA downstream 855508 4507504 ~ 4511307 (-) True G139029
TU174873 lncRNA downstream 870453 4496162 ~ 4496362 (-) True G139028
TU174872 lncRNA downstream 871397 4495028 ~ 4495418 (-) True G139027
TU174871 lncRNA downstream 890152 4476464 ~ 4476663 (-) True G139026
TU175135 lncRNA upstream 16781 5396339 ~ 5396559 (-) True G139249
TU175433 lncRNA upstream 778185 6157743 ~ 6158763 (-) True G139496
TU175564 lncRNA upstream 1102709 6482267 ~ 6510125 (-) True G139593
TU175618 lncRNA upstream 1622107 7001665 ~ 7073536 (-) True G139639
TU175655 lncRNA upstream 1839311 7218869 ~ 7219192 (-) True G139668
AMCG00002878 mRNA downstream 11828 5347443 ~ 5354987 (-) True AMCG00002878
AMCG00002879 mRNA downstream 51646 5304911 ~ 5315169 (-) True AMCG00002879
AMCG00002876 mRNA downstream 69613 5289680 ~ 5297202 (-) True AMCG00002876
AMCG00002875 mRNA downstream 90740 5262750 ~ 5276075 (-) True AMCG00002875
AMCG00002873 mRNA downstream 125309 5240760 ~ 5241506 (-) True AMCG00002873
AMCG00002883 mRNA upstream 58822 5438380 ~ 5443809 (-) True AMCG00002883
AMCG00002890 mRNA upstream 216799 5596357 ~ 5597064 (-) True AMCG00002890
AMCG00002893 mRNA upstream 290554 5670112 ~ 5671942 (-) True AMCG00002893
AMCG00002894 mRNA upstream 316651 5696209 ~ 5712088 (-) True AMCG00002894
AMCG00002899 mRNA upstream 430580 5810138 ~ 5826278 (-) True AMCG00002899
TU174755 other downstream 1364011 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 1416647 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 2647396 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 4441417 923010 ~ 925398 (-) False AMCG00002752
TU174136 other downstream 4442581 923010 ~ 924234 (-) False AMCG00002752
TU175621 other upstream 1682915 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 1969253 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 2551699 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 3105803 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 3467474 8847032 ~ 8847840 (-) True G140006

Expression Profile