RNA id: AMCG00002878


Basic Information

Item Value
RNA id AMCG00002878
length 450
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00002878
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5347443 ~ 5354987 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCCCAACTCACTCAAGTGGGTCGGCTCACCTTGTGGTTTGCACGGACCTTACATCTTCTACAAGGCTTTTAAATTCAACCTTGAAGGCAGACCCCGGATCCTGTCCCTGGGCGACTTTTTCTTGGTGCGCTGCAAGCCGGAGGAGCCCATTTGCATAGCGGAGCTCCAGCTGTTGTGGGAAGAGAGGACGAGCAGGCAACTTTTATCCAGCTCCAAACTTTATTTTCTCCCTGAAGATACTCCCCAGGGACGGACTGTCAGTCACGGGGAGGATGAGATTATTGCTGTTTCAGAGAAAGTCATAGTGAAGTTGGACAATCTGGTGAAATGGGCCACTTTGGATTTCTCCGAGTGGACCTGTGGTCTCAAAGCGGTCCAGTTAAAGCCATCCACCCAGAAAGAGCTGGGGAAGAACGGACAGAGGGACGTCTTGCAGAAATACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU174884 lncRNA downstream 763271 4583865 ~ 4584172 (-) True G139039
TU174874 lncRNA downstream 836136 4507504 ~ 4511307 (-) True G139029
TU174873 lncRNA downstream 851081 4496162 ~ 4496362 (-) True G139028
TU174872 lncRNA downstream 852025 4495028 ~ 4495418 (-) True G139027
TU174871 lncRNA downstream 870780 4476464 ~ 4476663 (-) True G139026
TU175135 lncRNA upstream 41352 5396339 ~ 5396559 (-) True G139249
TU175433 lncRNA upstream 802756 6157743 ~ 6158763 (-) True G139496
TU175564 lncRNA upstream 1127280 6482267 ~ 6510125 (-) True G139593
TU175618 lncRNA upstream 1646678 7001665 ~ 7073536 (-) True G139639
TU175655 lncRNA upstream 1863882 7218869 ~ 7219192 (-) True G139668
AMCG00002879 mRNA downstream 32274 5304911 ~ 5315169 (-) True AMCG00002879
AMCG00002876 mRNA downstream 50241 5289680 ~ 5297202 (-) True AMCG00002876
AMCG00002875 mRNA downstream 71368 5262750 ~ 5276075 (-) True AMCG00002875
AMCG00002873 mRNA downstream 105937 5240760 ~ 5241506 (-) True AMCG00002873
AMCG00002874 mRNA downstream 150750 5190120 ~ 5196693 (-) True AMCG00002874
AMCG00002877 mRNA upstream 11828 5366815 ~ 5379558 (-) True AMCG00002877
AMCG00002883 mRNA upstream 83393 5438380 ~ 5443809 (-) True AMCG00002883
AMCG00002890 mRNA upstream 241370 5596357 ~ 5597064 (-) True AMCG00002890
AMCG00002893 mRNA upstream 315125 5670112 ~ 5671942 (-) True AMCG00002893
AMCG00002894 mRNA upstream 341222 5696209 ~ 5712088 (-) True AMCG00002894
TU174755 other downstream 1344639 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 1397275 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 2628024 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 4422045 923010 ~ 925398 (-) False AMCG00002752
TU174136 other downstream 4423209 923010 ~ 924234 (-) False AMCG00002752
TU175621 other upstream 1707486 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 1993824 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 2576270 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 3130374 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 3492045 8847032 ~ 8847840 (-) True G140006

Expression Profile