RNA id: AMCG00002890


Basic Information

Item Value
RNA id AMCG00002890
length 489
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00002890
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5596357 ~ 5597064 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAATACACTGGCACAGTGATTGTAGCCGACGTGACAGAAGTGGTTCCTCCAGAGATCAGCAGGGTGGAAGATGAAGATGGATATTTAATCGGTGAAACTGAGCCATTGAGCATAGCTGTTTCTGTAGAGGACACAGCAGACTTCACAGGTGAAGACAAGGAAGACACCAGCATTCCTTTGGGTGTCCCAGCAGCATCTGTGCTAGATTTCACTGAGGAGAGGGCAGATATTGCCTTCATAGGGGAAGACGTAACAGGTGCTGCAGAGGATATAACTGACTTAAACGGCAAACTTGAACTGTACATATTGACTGTCGATTTTGGAGATGCTGGTGGAGTCATGGTGATTGAAGATCTTTCCAGTAAAGACCCTGCAGTGGTAACAGGGGAAGTCCTTGACAGTGATGATGCAAGTCCTTTTACTGATGTAGGTTCTGGCCCAATGGAGGATTTACCTGGTGAAGACATTAATGTAGTGGAGACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175135 lncRNA downstream 199798 5396339 ~ 5396559 (-) True G139249
TU174884 lncRNA downstream 1012185 4583865 ~ 4584172 (-) True G139039
TU174874 lncRNA downstream 1085050 4507504 ~ 4511307 (-) True G139029
TU174873 lncRNA downstream 1099995 4496162 ~ 4496362 (-) True G139028
TU174872 lncRNA downstream 1100939 4495028 ~ 4495418 (-) True G139027
TU175433 lncRNA upstream 560679 6157743 ~ 6158763 (-) True G139496
TU175564 lncRNA upstream 885203 6482267 ~ 6510125 (-) True G139593
TU175618 lncRNA upstream 1404601 7001665 ~ 7073536 (-) True G139639
TU175655 lncRNA upstream 1621805 7218869 ~ 7219192 (-) True G139668
TU175760 lncRNA upstream 1858480 7455544 ~ 7458491 (-) True G139752
AMCG00002883 mRNA downstream 152548 5438380 ~ 5443809 (-) True AMCG00002883
AMCG00002877 mRNA downstream 216799 5366815 ~ 5379558 (-) True AMCG00002877
AMCG00002878 mRNA downstream 241370 5347443 ~ 5354987 (-) True AMCG00002878
AMCG00002879 mRNA downstream 281188 5304911 ~ 5315169 (-) True AMCG00002879
AMCG00002876 mRNA downstream 299155 5289680 ~ 5297202 (-) True AMCG00002876
AMCG00002893 mRNA upstream 73048 5670112 ~ 5671942 (-) True AMCG00002893
AMCG00002894 mRNA upstream 99145 5696209 ~ 5712088 (-) True AMCG00002894
AMCG00002899 mRNA upstream 213074 5810138 ~ 5826278 (-) True AMCG00002899
AMCG00002898 mRNA upstream 229728 5826792 ~ 5846647 (-) True AMCG00002898
AMCG00002902 mRNA upstream 289993 5887057 ~ 5900218 (-) True AMCG00002902
TU174755 other downstream 1593553 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 1646189 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 2876938 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 4670959 923010 ~ 925398 (-) False AMCG00002752
TU174136 other downstream 4672123 923010 ~ 924234 (-) False AMCG00002752
TU175621 other upstream 1465409 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 1751747 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 2334193 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 2888297 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 3249968 8847032 ~ 8847840 (-) True G140006

Expression Profile