RNA id: AMCG00002900


Basic Information

Item Value
RNA id AMCG00002900
length 3213
RNA type mRNA
GC content 0.39
exon number 2
gene id AMCG00002900
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 5908977 ~ 5913523 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGCGCAGAGAGTACGGGGCGGGTCGCCTCAGATAACCCCGGGCTGccagcttttattatttttaatgtattgaatatCAAAATTATCAAAACTAAAAACGACATCCATTGACCCGGCTTGAAACAATTAATGTGCCTGGGGGGTTGGTTTTTCTTTACTCTTTTCGATGAATTGCACCAGGGTCCTTCACATCTTGAACCCTAGACCATTACCGGGCCCTATCATGCCAGTAGATGTAGCCATGAGACTCTGCCTGGCACATTCACCCCCCCTGAGGAGTTTCCTCAGCTCTTATGAGGACTGCAGGGGGAGAAACCTGGTGAACAGGTACAAACCACTGAGACCGTGCATCAGCTCAAAACAAGAGGAAGAGGCAGCGAGCGTGCAATGGCAAAAACCCAAGACCAAATCGAAGAAGAGGGTGGTGTTTGCTGATTCTAAGGGCCTGTCCCTCACAGCCATACACGTGTTTTCGGAGTTTGAGGAGGATCATATTTCAGAGCTGCAGTTCGATCTCACTGACCTGGAAGATGCCACAGGGGGTTTGAAAGTCAGTAAGGACAGAAACTTGGTCCTGGACTTCTGCCAACCTGCTGCCGATTACTTGGATTTCAGAAATCGTCTCAAAAAGAATTTCGTGTGTCTGGAAAATTGCTCCCTCCAGGAAAGGTTGCTTGCCGGcacagtgaaagtgaaaaacacaaGCTTTGAGAAATCTGTCCAGATACGCATCACTTTCGACACGTGGAAAAGTTACACGGACGTCGAATGCGTCTTTATGAACAATGTTTACGGTTGCTCAGAAACCGATACCTTTTCTTTTGTCATTGACCTGCCAGATTTTGTGCCCCCTCATGAGCGAGTTGaattctgcatttctttcaaaacCCAAGATCAGACCTTTTGGGACAATAATGACGAGAAGAACTACAGACTAGTGCACACCGAGTTGAAATGTCATGGTGTTCAGGTCCCACCTATTCTCCAGAATAAAACGTCAGAATATAAAACCCCCAACAAGCCTCAGGAGATGGAGTTTGATCAATTCGGTAGTCCTAGGACGTCAAGTGGACTCTTCCCCGAATGGCAGAGCTGGGGCCAGGTTGAGAACACCGCCCCCTATTGGTGACTGCATGCTTCATGTTAGACAAATGCACAGGAGTCGTTTTCCAGAAGTCTTTGCAAGTGCTTGGAAAGACGAGAAACAAAGTCACTTTAGGAAGCCTGAAGCCTAATGGTTTATACTCTACATGGTTCCCGAGTACAGCAAGTacagctttttgtgttttaaacgGAAATGCTAGAACATAGAAAACATTGATCTTCTTTTTTTGCCTCTTCAACCGATATAAAGAAGACTCTGCTTTCAGTGTTGTGGGCTTTAGGACACAAGTGCTATTGAAACGTTTTTTTGCTAATCCAAAAATGGAGAGGTCCAAGTGCGAGTGTATCATATGTATAATTTGGGGCATGGGTTATGCTCAAGTTCTTATTACAGTACCTCAGCATTGCCTTCTTTCACTTTCTGTAGTGATAACCTAACCTAGCTATATCCCAAATCACTTTCAATAAGTAGCAAGTGTGTACCATTTAAGCAGTGTGCATAAACCTTTTATAGAATACTCTAGCGAATCACTTTGAAAGACGCAGGCAGAGTAACAAAATACGTACAAATCACTAGTTGAGACACTGATGAGTTGTAGCAGGTCTAAGACATGCTGTAAGGAAATTcagaaactgtattaaaaatagtCTAGTTTTGAATTATCAAATCAGAAATATTTGTTACATTCAAAGCATGATATtgagtattgtttttattaatctgaTGTCTTTCTCAAAGCAATTGAAGCTAATTTTGATTTGTCTATTTGACAAAAATACTCATCAAATAATCATGCTGTTCATGGCCtcataatatttgaaaatgaattaaaacaaatagtttagtatttggtattttacagttcaaactgaaatatatacCAGAccttgcaattaaaaaaataaatattgtgaatgTTGTTGTCTACTTAAACTTTAAGTTTGGTTCCTTGTATTAAAATCGTATTTTACCAGTTAGACAGCTTAAGATGGATTGGTTTGATTTCATGTACTATAAACAAAAGCTTGCAACCCCGAAAAACAAAGTATTACGttaaagaaatgtacatttatactGATCATATATTGACATTTAGAAAGACATTAGTAAGGACAGAAGAAGATGATTCAGTTGAACTTGAagttcaaacacattttcttacCCAGAAAAGTGCCTTTTGTTTGAATCGGATGCCACCATGTGAAGCATTTGTCTCATCTCCCATCATTACATCTGAATCAAGATTAAATATGCACCAGTTCattggaattatttatttatgatcaCAGCAATAATTGCCACCAATTGTTGTTTGGTCTGTTTAATGTAAGCCACCTGAATGTTGTTGTGCTGTAAAAGATTCAGTGGTGAGCAGTTTGCACTGATGGAAACGAAGCCTTTTAAATCTGTGAATGTGAGTGTTTAAACTGGTACAGATACAAAGTCCTTCATATTGAAGATGTTTAATTGTGGTACCTTCTAATTAATTACTTTCAGGAAAGAAATTGGTTGTCCTAATTTCCCAATAgagtaaatatttacatgtaagAAATGCATCTTCCCTTTTTGCACATAAATGTTTGCCTGCATTTCTAATCactttttgaatatttataattacagaAGCAAGTAATACACTTCACCAGGTTATTCTCTACACAGTATTTGCTGCTATGTTTTTGTATATGCTGGTTGTCTTGCATTTATTAATCCAGTGCTATTAGAGAATATTGTTGTGTGTGAAACTGAGGAGTGATGTGCAGAATGAGATGGCATGTTATGTAAGGGTTGTATGAGTAAGTAAATAAGAGTGTGTAGGTGAAAGAGTCTAAGAGGAAATGTGTCATAGTGGACCTGCTATCCTTTCCCTTTTTAAGAAATGGAGGTCATTGTGAGTCAGATATCTCTAAAGTCTGTTTGAAAAGGTATGCTATccgatttgttttttttccagaagtGCAATGTGGAGGTGAATGTTAAGGGGTGATGCACAAAGCCTGTATCTGACAcccagatatttttttttactgtaaatacatgtttcttgTGTGCCAGaacttttctctcttctttgtccctttaataaataattttttatattgtCAA

Function

GO:

id name namespace
GO:0005977 glycogen metabolic process biological_process

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175250 lncRNA upstream 89852 5818052 ~ 5819125 (+) True G139351
TU175151 lncRNA upstream 466698 5439777 ~ 5442279 (+) True G139263
TU175122 lncRNA upstream 542294 5366435 ~ 5366683 (+) True G139238
TU175087 lncRNA upstream 669487 5239350 ~ 5239490 (+) True G139205
TU175041 lncRNA upstream 840082 5067472 ~ 5068895 (+) True G139170
TU175425 lncRNA downstream 224598 6138121 ~ 6140671 (+) True G139488
TU175436 lncRNA downstream 281088 6194611 ~ 6197030 (+) True G139498
TU175445 lncRNA downstream 284747 6198270 ~ 6198502 (+) True G139504
TU175446 lncRNA downstream 285836 6199359 ~ 6199856 (+) True G139505
TU175447 lncRNA downstream 287680 6201203 ~ 6201470 (+) True G139506
AMCG00002897 mRNA upstream 29953 5858274 ~ 5879024 (+) True AMCG00002897
AMCG00002895 mRNA upstream 57106 5850528 ~ 5851871 (+) True AMCG00002895
AMCG00002896 mRNA upstream 91291 5779744 ~ 5817686 (+) True AMCG00002896
AMCG00002891 mRNA upstream 178682 5715412 ~ 5730295 (+) True AMCG00002891
AMCG00002892 mRNA upstream 219285 5676170 ~ 5689692 (+) True AMCG00002892
AMCG00002903 mRNA downstream 98305 6011828 ~ 6016245 (+) True AMCG00002903
AMCG00002904 mRNA downstream 106735 6020258 ~ 6038908 (+) True AMCG00002904
AMCG00002911 mRNA downstream 173037 6086560 ~ 6092066 (+) True AMCG00002911
AMCG00002908 mRNA downstream 180582 6094105 ~ 6110512 (+) True AMCG00002908
AMCG00002910 mRNA downstream 204206 6117729 ~ 6132219 (+) True AMCG00002910
TU175054 other upstream 810233 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 1879053 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 2312869 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 2792896 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 3414383 2492086 ~ 2494594 (+) True AMCG00002784
TU175429 other downstream 234225 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 1153420 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 1463164 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 2009659 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 2124054 8037577 ~ 8044220 (+) True AMCG00002965

Expression Profile