RNA id: AMCG00002907


Basic Information

Item Value
RNA id AMCG00002907
length 1035
RNA type mRNA
GC content 0.40
exon number 9
gene id AMCG00002907
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6016336 ~ 6020142 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTCTCACATGGAAGCATCATGGCTCTCTTCGCAGACTTAAACATTACCAATTCCACCAATACGAAAAAGCTTCAGAATATAATAGAAACAGCAGCTCATCtCGGATACTCCACTGTTGCAATCAATCACCTGGTTGACTTGCAACAAAAGAAGCAGGGAAGATCAAAACCAATCAAAGTGTTAAACAGATTAACACTGGTGGCTTCTGATGCATCTCAGTTTAGGCCTTCTGCAGATTTTAAGAATTATGACATTGTGGCGATACTCGCCAAAACTGAGAAGCTGTTTCAtGCTGCCTGCATGTCATTTGATGTTGACATAGTCTGCATCACTGTGACTGAAAAGCAATCCTTCCATTTCAAAAGACCTCCGGTAAATGGTGCCATAGACAGAGGAGTGTACTTTGAGATTAACTACACACCTGCTATTAAAGACTCAACGATGAGGAGATACACCATTTCAAACTCACTCAGTCTAATGGAGATCTGCAAAGGAAAGCCTCTAGAATTACGAGGACCTTATGACATCGCCAATCTCTCCAGGGGGCTGCTGTTTGGCTTGTCAGAAGGGGATGCCAAAGCCGCAGTATCTACAAACTGCAGAGCCGCACTCCTGCATGGAGAAACTAGAAAGACAGCTCTTGGGATAATCCACACCATGAAGAAAGTCCAACAACCTGAGGAAGAACAGGCAGAGGAAGAGGCTCCAGCATCAAAAAGGGCAAAAAAAACCAATGTATGACACTGGATATTGGCGGATTAAATTACCacattatattatgttattattatttacaatccACTATGTGATTCATCCTCTGTGTATGAAATTCCTGCCTTGTGTTGCACATGACAATTATGTTCATGATTCATTTTTATAGTAGGTAGTTAAGTTACAGTGAATCACCAGCTATGATGTGTTCAATGTCTTTGTTACAGAGgttgttttaaagtgtaacaTTTGAGTGTGATGTTTCACATGTTGTCTTGTAGAgagtataaaataaatctgatttgCTCATTTTTATCTGACA

Function

GO:

id name namespace
GO:0010467 gene expression biological_process
GO:0044238 primary metabolic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K03539 RPP1, RPP30; ribonuclease P/MRP protein subunit RPP1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175135 lncRNA downstream 619777 5396339 ~ 5396559 (-) True G139249
TU174884 lncRNA downstream 1432164 4583865 ~ 4584172 (-) True G139039
TU174874 lncRNA downstream 1505029 4507504 ~ 4511307 (-) True G139029
TU174873 lncRNA downstream 1519974 4496162 ~ 4496362 (-) True G139028
TU174872 lncRNA downstream 1520918 4495028 ~ 4495418 (-) True G139027
TU175433 lncRNA upstream 137601 6157743 ~ 6158763 (-) True G139496
TU175564 lncRNA upstream 462125 6482267 ~ 6510125 (-) True G139593
TU175618 lncRNA upstream 981523 7001665 ~ 7073536 (-) True G139639
TU175655 lncRNA upstream 1198727 7218869 ~ 7219192 (-) True G139668
TU175760 lncRNA upstream 1435402 7455544 ~ 7458491 (-) True G139752
AMCG00002906 mRNA downstream 17563 5974562 ~ 5998773 (-) True AMCG00002906
AMCG00002901 mRNA downstream 61233 5936812 ~ 5955103 (-) True AMCG00002901
AMCG00002902 mRNA downstream 116118 5887057 ~ 5900218 (-) True AMCG00002902
AMCG00002898 mRNA downstream 169689 5826792 ~ 5846647 (-) True AMCG00002898
AMCG00002899 mRNA downstream 190058 5810138 ~ 5826278 (-) True AMCG00002899
AMCG00002905 mRNA upstream 63619 6083761 ~ 6086472 (-) True AMCG00002905
AMCG00002914 mRNA upstream 112692 6132834 ~ 6141012 (-) True AMCG00002914
AMCG00002913 mRNA upstream 122761 6142903 ~ 6144393 (-) True AMCG00002913
AMCG00002912 mRNA upstream 153756 6173898 ~ 6179201 (-) True AMCG00002912
AMCG00002919 mRNA upstream 176832 6196974 ~ 6201996 (-) True AMCG00002919
TU174755 other downstream 2013532 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 2066168 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 3296917 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 5090938 923010 ~ 925398 (-) False AMCG00002752
TU174136 other downstream 5092102 923010 ~ 924234 (-) False AMCG00002752
TU175621 other upstream 1042331 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 1328669 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 1911115 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 2465219 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 2826890 8847032 ~ 8847840 (-) True G140006

Expression Profile