RNA id: AMCG00002910


Basic Information

Item Value
RNA id AMCG00002910
length 3498
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00002910
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6117729 ~ 6132219 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCTTAACAAGATAAAGCTTGCTTTACTGATCGTCAATAGCAAGGTTTCTTCCAGAGACAAACCTGCATATCTGCATTATTTAAGAGTTTGGCGTCTGGAGTACTGGTACCTAAGCCTATACACTTCATGTGCGCATTCTGGTGGATCTTTGTGCCGCTGAGATGGATAATTAAAAGGCGAATCCACATGCATGGGTCGCATCTACTTCAGAGCCAGGATTACTGCATGGGATCTGGGACCATGCGGGAGGAGACAGAAAGCCCAAAGTTTTGCTCTTAGGTATCTTTATAGAATGCAATGTACTTTCACTGGTTGTATTTTGAAGATGCAGAGCTTGCTTACTTGGGACATTTCAATGAATGTGCAGCATAACTCAACTAAGAAGCCCCCCATCGGATAACATTCCATGCATTCTGTGCAACAGGGAACACTGCCGCACTGAGCAAAGTATAGCTGGAGATCAGCACTAATAACTTGAAATGGAAAAAGGGATTAGGGGAGCGAGCTCTGTTACAACCATGGCCCAGACGAAAAAGGTGCCGGGAATCGCCCCTCCTGATGGAGGCTGGGGATGGATGATCGTTGCTGGCTGCTTCATCGTCACGGTCTGCACCCGAGCTGTCACCAGATGCATCTCCATCTTCTTTGTGGAATTTCAAATGCAGTTTGCTCGGGATTACTCAGGCACAGCATGGATTCACTCTTTAGTGGACTGCGTTACAATGCTCTGCGCGCCGCTTGGCAGCTTCATTGGGAATCGTCTCTCCTGTCGCATTGCTATCATTCTCGGAGGGTTTCTGGCCTCGACGGGTCTTGTCCTGAGCTCTTTCGCCACCAGCCTGGAGTACTTGTATCTGACTCTGGGAATCCTCACAGGTATGGGATTTGCACTGTGCTACACCCCTGCCATTGCCATGGTAGGGAAGTATTTCTGTGAAAGGAAAGCACTGGCTTATGGGATTGCCATGTCAGGCAGCGGAATTGGGACCTTTGTTCTGGCCCCGGCGGTGCAGCTCCTGATAGAGCACTACTCCTGGCGTGGGGCTCTTCTCATCCTGGGGGGGTTCGTGTCCaacctgtgtgtctgtggagcCTTGATGAGACCTATCACTCTTAAAGAAGAGGAAATCAGTGACACTTCACCGGCTGAGACAGAACACGAATACACCATTAAACAAAATTGCTTGAACTCACCGCCGGTGCAGCTGATCAGCAAAGACCGGGAGCAGAGCTGTTTCTGCTTCCAGTCGATCCAAGAGTATCGCTTTCTCCTGATGCCCGACTTCGTGGTGTTGGCGGTGTCCTTCCTCTTCCTGGCCTACGGCTGCAGCGTTCCCTTCGTTTACCTCGTTCCCTACTCCCTGAACGTTGGCGTGAGTCACCAGCAGGCAGCCTTCCTCATGTCTATCTTGGGGGTGATTGACATCGTGGGCAATATCACCTTCGGTTGGCTCACAGACCGCAGGTGTTTAAAGAAGTATCGAAACATCTGCTATATGATCGCAGTAGCCATGGAGGGTCTCTGCTGTCTTTTCATTCCCCTTCTGCAAAGTTTCCCACTCCTGGTGCCTTTTTCAGTGCTGTTTGGCTATTTCGATGGGGCCTATGTGGCCTTAATACCCGTTGTGACATCAGATGTGGTTGGGACTACATATCTTTCTTCAGCTCTGGGAgttgtgtattttcttcatGCAATACCATACCTTGTCAGCCCACCAATTGCAGGCTGGCTGGTAGACAGGACGGGCACCTACACCGCAGCCTTTCTCCTGAGTGGCTTCTCCCTCATCTCCTGCTCAATGCTGCTGTGCGGCGCAGCCGTCATTGAAAAGTGCCGGAGAACACGGTCTGGGACTTACACCACCACTAACACAGAcccaaaactacagaactggaAGAACAGCCAGGCAAATTGCTAGCTTCAGAACAAGAACCAAAGTCTGTGTGATAGAGACACATTTAACACGTCAGCTTGATAGAAACAAactaattttttgttttgtttcttcactcAGTTCagcctgattttgttttgccttttttgtaaTACCAAAGTACAGTACTGTTAAagtatacaataaaatgaaattgtattgATTCTTAAGGAATTTTACAATGATATACACAtattggtgtgtgtgagtgtttatgtgcatgtgtgtctgtacagATTTCATATTTCTTGATTTGATCATGTTGTAAAAAGTATAATACTTTTTATAACTGATCTGGGAGTGTACGAGCTTTCCCCTAATTGCTTAATATGTAAGAATTCGAgaacattattatgattatattttcatGGTATGAAACTAggttaaaactgaaaacattaactTCTTACTAATCATGAATAAGTGGTTCATGTTTTTATGAAGATGACCAAAGTGTGTTGTTATATGGTTAGATGTCTAATACAAATTCAGAAGCTTTATTTTCCATCAAAGTTGGGTAACGTTTACAAAACTTTTTCTCCACACAATGTGGAAGATACtgacagttaaaaaataaaaagtcacagTATAGTCAATGTTCAGGTCAGGACATTTGGTGGTGCCAAAGCAATGGTAATCCTAGATTTGTAAcataatctgtttttttcatctGTAGTCTACTTATGTTTAACCATCAGGCTAAATATCTTATAGTTACCTATGTCAAATCCACCccatcttattttatatttgtttacatgatcTGTGttacttgtttttgtgttctagACCTCTATTTCGAATAATacgtaattattattattatttatttcttagaagacacccttatccagggtgacttacaaaatataagcgcaatacaaagtgcaaacatacagtgcagtacaaggcataacatatttacaaattccaattcacattatatatgaggtcttacatcctgaaCTGTGAAATTGCTTTTGCTTGTATAGTAAGACACAATTGCATGTTTATAGATAATTAAAAGCACCAGAAATTAAAAAGTTGGAAAGTAACACAGGTTATGAAAGCAAGCCATAAGACCtgtatattttgatatttgttcttgtgttgttgtttgtttgttttgtttgttttttaatcatagaTCTCCATCTGGTGGAATATTTTTAGCATTACACACGTGGATTTTGTTCAAAAGGGAACAGCTACTACTTGATCAATCTCTACAGTATTAAGGATTCATATGTAATATCATTATATCATAGAATGTCACACtatgaacaatttaaaaacaaacaattaaaatgttttttgcaaTCGGATTTCAGTCATGCTCATAAAGACAgatgtttgatatattttagcAACTTCCTTACTGTGAGCTTTTTCCtgcaaaatacagcaaaaagtgcaaaaataaacgTAATACTTTAAAACCTGATCTGCTTCCATGTTTGtggtgtaacattttattttagttacctGGACCCATAAAGCCCATGTAATttgctaatttaaaaatgttcagtgtgtatagtacattatcatttgtatttcca

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015293 symporter activity molecular_function

KEGG:

id description
K11810 SLC16A12; MFS transporter, MCT family, solute carrier family 16 (monocarboxylic acid transporters), member 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175250 lncRNA upstream 298604 5818052 ~ 5819125 (+) True G139351
TU175151 lncRNA upstream 675450 5439777 ~ 5442279 (+) True G139263
TU175122 lncRNA upstream 751046 5366435 ~ 5366683 (+) True G139238
TU175087 lncRNA upstream 878239 5239350 ~ 5239490 (+) True G139205
TU175041 lncRNA upstream 1048834 5067472 ~ 5068895 (+) True G139170
TU175425 lncRNA downstream 5902 6138121 ~ 6140671 (+) True G139488
TU175436 lncRNA downstream 62392 6194611 ~ 6197030 (+) True G139498
TU175445 lncRNA downstream 66051 6198270 ~ 6198502 (+) True G139504
TU175446 lncRNA downstream 67140 6199359 ~ 6199856 (+) True G139505
TU175447 lncRNA downstream 68984 6201203 ~ 6201470 (+) True G139506
AMCG00002908 mRNA upstream 7217 6094105 ~ 6110512 (+) True AMCG00002908
AMCG00002911 mRNA upstream 25663 6086560 ~ 6092066 (+) True AMCG00002911
AMCG00002904 mRNA upstream 78821 6020258 ~ 6038908 (+) True AMCG00002904
AMCG00002903 mRNA upstream 101484 6011828 ~ 6016245 (+) True AMCG00002903
AMCG00002900 mRNA upstream 204206 5908977 ~ 5913523 (+) True AMCG00002900
AMCG00002909 mRNA downstream 25554 6157773 ~ 6158567 (+) True AMCG00002909
AMCG00002916 mRNA downstream 57145 6189364 ~ 6193500 (+) True AMCG00002916
AMCG00002917 mRNA downstream 77509 6209728 ~ 6212571 (+) True AMCG00002917
AMCG00002918 mRNA downstream 95968 6228187 ~ 6234155 (+) True AMCG00002918
AMCG00002915 mRNA downstream 122951 6255170 ~ 6266600 (+) True AMCG00002915
TU175054 other upstream 1018985 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 2087805 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 2521621 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 3001648 3107458 ~ 3116081 (+) True G138790
TU174426 other upstream 3623135 2492086 ~ 2494594 (+) True AMCG00002784
TU175429 other downstream 15529 6147748 ~ 6153120 (+) True G139492
TU175613 other downstream 934724 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 1244468 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 1790963 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 1905358 8037577 ~ 8044220 (+) True AMCG00002965

Expression Profile