RNA id: AMCG00002913


Basic Information

Item Value
RNA id AMCG00002913
length 1491
RNA type mRNA
GC content 0.47
exon number 1
gene id AMCG00002913
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6142903 ~ 6144393 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTACAGCCCAATTAATGTGCTCTGTCACCTTTATATTCCCAGTGCCCCACAGAACGCTGACCTTGAAGCCAAGCTGGAGAAACTCGAGTGTCACTTCACATGGGGTTTACAACGAGACAACATTAAAGATCTTGATAACATCCCTGAAAAGCTCCTGGATCGAGTGAAATTCTGCCACCGGCGATATCATGCCACATACTTTAATATACTAGCATATGTTAGCCAGCTAGAGGGAAACAATGAAGCTGCCCTTGAATTCCTCGGCCAAGCAGAGACCATTTTAAGAGGAGAAGATCCATTTTCAGAGGATAGTTTGCTGGTTACGTATGCAAACTTTGCATGGGTTTACTATCACATTGGTAATCTTACTGAAGTGAGTAACTATCTTGGCAAACTGGAAAGCATTTGCAAGGGCATCCCCAGGTCAGCACAGTATTCAGCCAAGGTGCCCGTTGTTTATGGAGAGAAAGGCTGGGCATTTCTCAGACTTGGGGCCGTATTTTATCAGAGTTCAAAGGAAAGTTTCCAGCAGGCTCTCCACGAAGAGCCAGAGAACGTGTCATTTAACATCGGATATGCGGTTGTCCTTTACAGACTCGATGGGCTGAGGGGGAGAAAAATGAATCCGGAATCCAGTGCTGCAGTAAACCAGCTGAGAAAGGTCTTGCAGTTGGAGCCCAGCGATTCTGAGGCCATGGTGCTCTTGGCCCTTAAACTTCAAAATGTCAAGAAAGAAGACTCCTTGAAGCTCGTGACGGAAGCGCTCAGGCTCTCTCCTGACGTGCCTCAGGTGACACGATATGCAGCAAAATATTTCCGAGCAGCAGGGTCTGTTGACAAGTCCTTAGAGATCCTTAAGGAGGCAGTAAAACTGGCCCCCCATTCATCCTTCCTGCACCATCAGATCGGCCTCTGTTACAAACAGCAGCTCATTGACTTGTTCCAGGTCAAGAAAGGCTCCCGACGTGTCCCCGCAGGTGACAAGAGGGCATTGGCTGCTCAGTGCATCTATCATTTCAAAAAGGCTGTGGAAATGAAGCCGTCCAATGTGCATGCTCAAGTCAATTTGGCCGAAGCCTATGGCGAGAACCGGCAATTGGAGGATGCAGAGAAGATCTTCTCTGACCTGCTTGGAGATGGCACCCTGTGCGACTCCGACAGGCAGCACTGTCATGCCAACTATggcttgtttttaatgtacaagAAGAAATCGGAGCTCAGCGCCATAAGACAATTTAAAATTGCATACAAAATGCCAGTGCAGACCCCAGCCAGGAATCTAGCTGGCAGAAAACTCAAACAAATTGCAGAAAGGCAACTCAAATCCAAGGATAGAGTTAGTGAGGGCTTTGAAATGCTGGCTTTTGTGTGCACTGAGGACAAGCAAGAGAGAAAGGCTATGGAGTACACAATGAGGGCAAAGCAGTGTGACACACCCAGCGTGGACAGCCTTAGTTCTGCCTTTACTAAAACAATGAAACTTGAATGA

Function

GO: NA

KEGG:

id description
K24850 IFIT5; interferon-induced protein with tetratricopeptide repeats 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175135 lncRNA downstream 746344 5396339 ~ 5396559 (-) True G139249
TU174884 lncRNA downstream 1558731 4583865 ~ 4584172 (-) True G139039
TU174874 lncRNA downstream 1631596 4507504 ~ 4511307 (-) True G139029
TU174873 lncRNA downstream 1646541 4496162 ~ 4496362 (-) True G139028
TU174872 lncRNA downstream 1647485 4495028 ~ 4495418 (-) True G139027
TU175433 lncRNA upstream 13350 6157743 ~ 6158763 (-) True G139496
TU175564 lncRNA upstream 337874 6482267 ~ 6510125 (-) True G139593
TU175618 lncRNA upstream 857272 7001665 ~ 7073536 (-) True G139639
TU175655 lncRNA upstream 1074476 7218869 ~ 7219192 (-) True G139668
TU175760 lncRNA upstream 1311151 7455544 ~ 7458491 (-) True G139752
AMCG00002914 mRNA downstream 1891 6132834 ~ 6141012 (-) True AMCG00002914
AMCG00002905 mRNA downstream 56431 6083761 ~ 6086472 (-) True AMCG00002905
AMCG00002907 mRNA downstream 122761 6016336 ~ 6020142 (-) True AMCG00002907
AMCG00002906 mRNA downstream 144130 5974562 ~ 5998773 (-) True AMCG00002906
AMCG00002901 mRNA downstream 187800 5936812 ~ 5955103 (-) True AMCG00002901
AMCG00002912 mRNA upstream 29505 6173898 ~ 6179201 (-) True AMCG00002912
AMCG00002919 mRNA upstream 52581 6196974 ~ 6201996 (-) True AMCG00002919
AMCG00002920 mRNA upstream 70466 6214859 ~ 6227743 (-) True AMCG00002920
AMCG00002922 mRNA upstream 153344 6297737 ~ 6319780 (-) True AMCG00002922
AMCG00002924 mRNA upstream 187257 6331650 ~ 6344823 (-) True AMCG00002924
TU174755 other downstream 2140099 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 2192735 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 3423484 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 5217505 923010 ~ 925398 (-) False AMCG00002752
TU174136 other downstream 5218669 923010 ~ 924234 (-) False AMCG00002752
TU175621 other upstream 918080 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 1204418 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 1786864 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 2340968 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 2702639 8847032 ~ 8847840 (-) True G140006

Expression Profile