RNA id: AMCG00002924


Basic Information

Item Value
RNA id AMCG00002924
length 3221
RNA type mRNA
GC content 0.49
exon number 13
gene id AMCG00002924
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6331650 ~ 6344823 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGGCggatggaggaggagggatgGAGGCAGGACGAGGGAAATGCTACCAACTCATCAAAGCACTTCCAACAGGCGAGCCACCCCGAGCAGCGGTTCAGAAGTACAGGGGTCCGAGGGAAAGAAAGAGCCCAGTGCAACATGTCTGGAGTCAAGAAGCAAAGGACGGATCTTCAGAAGTCAACCAACGTTGTCTACCAGGCCCATCATGTGAGTCGCAGTAAGAGAGGCCAGGTCGTGGGCACCAGAGGGGGTTTCCGTGGCTGCACCGTCTGGCTCACTGGGCTGTCGGGAGCTGGGAAGACGACCACTGGGTTTGCTCTTGAGGAGTACCTGGTTTCCCATGGCATTCCCTGCTACTCTCTGGACGGCGACAACATCCGCCACGGCCTAAATAAGAACCTGGGCTTCACTTCCGCCGACCGCGAGGAAAACATCAGGCGAGTGGCGGAGGTGGCCCGGCTGTTTGCGGATGCTGGCCTTGTCTGTATCACGAGCTTCATCTCCCCCTTCACCAAGGATCGTAACGATGCGCGGAAGATCCACGAGAACGCCGGCCTGCCGTTCTTCGAGGTGTTTGTCGATGCGCCTCTGGATGTGTGCGAGAGTCGAGATGTGAAGGGGCTGTACAAGAAGGCCCGAGCTGGAGAGATTAAAGGCTTTACTGGCATTGATTCGGACTATGAGAAACCGGAGTCTCCTGAACTGGTGCTAAAGACTGGAGAAACCACACTGAATCAGTGTATCCAGCAGGTGGTGAAGCTACTGAAGGACCAGAATATTGTTCCTTCTGGGGTCACCGAGGAAGTGAACGAGCTGTTTGTGCCCGAGAACATGATGAACCTGGCACTGGCTGAAGCCAACACCCTGCCCGCCCTGGAGATCACAGAGCTGGACTTGCAGTGGGTTCAGGTGCTGGCCGAGGGATGGGCCACTCCTCTGCAGGGCTTCATGAGAGAACGGGAGTTTCTGCAGGTCCTGCACTTCAACACGCTGCTGGACGGTGGGACCATCAATCTCTCTGTGCCCATTGTCCTGCCCGTGTCTACGGAGAACAAAGATAGTCTGGGCGGCAGTGATGCGATTGCCCTGGTGTTCAAAGGTCGCAGGGTGGCCATTCTTCGCAACCCAGATTTCTATGAACACAGGAAAGAAGAGCGCTGTGCCAGGCAGTGGGGCACCACCTGCTCCCAGCACCCCTTCATCAAGATGGTGATGGAAAGTGGCGATTGGTTAGTCGGGGGGGAACTGGAAGTGCTGGAACGAATCAAGTGGAACGATGGGCTGGACCATTACCGGCTGACTCCGCGAGAACTGAAGCAGAAGTTCAAAGAGATGAAAGCAGATGCCGTCTTTGCGTTCCAGCTACGAAACCCGGTTCATAACGGGCACGCCTTGCTGATGCAGGACACGAGGCGCCGGCTGCTGGAGAGGGGCTACAAGCACCCAGTGCTGCTGCTTCACCCACTGGGGGGCTGGACAAAAGATGATGACGTGCCCCTGAGCTGGCGCATGAAGCAACACGCCGCCGTGCTGGACGAGGGCGTTCTGGACCCCGCCTCCACCATCGTGGCCATCTTCCCCTCGCCCATGATGTACGCCGGCCCGACCGAGGTTCAGTGGCACTGCAGGGCCCGGATGATTGCCGGAGCTAACTTCTATATCGTGGGCCGTGACCCTGCGGGGATGCCCCACCCAGAGACCAAGAAGGACCTGTACGAGCCCACGCACGGGGGGAAGGTGCTCACCATGGCCCCGGGCCTCACCTCGCTAGAGATCATCCCCTTCAGAGTCGCTGCGTACAACAAAAGCAAGAAAGCCATGGACTTCTATGATAAAGAACGTCACAGTGACTTTGATTTCATCTCTGGGACCCGGATGAGGAAGATGGCGAGGACAGGCGAGAATCCCCCGGACGGCTTCATGGCCCCCAAAGCTTGGAAGATCCTGACTGAATACTACAGCTCTCTAGAGAAAGACCAGTAACTTTCGATTCATAGAAAGGTCTATAGCTCTGACAgataattattcaatttgtaaACCTTTAtagtcatttttaatataaaaacagtggGCAGATTAATTCTGTAGCTGAACTGTAATGAATGACCAGTTATGTAGTTATTTCTCTATTTTAACCcacttttctttcattattctGTCTTTTGTATGTGTAcctatgaatgttttttttacagtctGAGGCATTAGCACAGGAGTTGAGAGAACAGATTAATCCTGCTCTTTTTTAACGTGTCTGACAGCAAATTAGTCTAcggcaaattatttattttttccaagagTCGTTTagaatataattgttttttttttttactgcatacAATTCCTCATCTCACTGTGGCGTGAGAGATGGTTTTCTTCTCCTCACGCACACGTTCAATTAGTTTGTGAGTCCCACGTGTTGACGGCTGGTTTAGCAGGTTCTGCTGAAAACCAAGTTGAAAGCCAGTCAGATCTTGATCTtgaatttatttacattccTTCTTGCCTGCAGACAGATTCGGAGCACAGGGATCtcatatgaaatataaaatacaaatgtaaagtaaCTTACTTATGCTTCCTCTACTTTTCCATGTCCCAGAGCTCGGTCTTATGCAGATTATGCAAATTAGTGTTTATGATCTTGCCCATCATTTCCCTGCTTGAACCCTTAAACTCTGCACAGATCAAACATGTGAAAAAGGGCAACGCACATATCCTTCAACACATCATGAACGTGTCCATTTCTTTTTATGTcaccttgttttaaaataactactGTACCTCATGTATTTAAAAGTGCTTTCCAAAGCTGTGACCAGATGGTATTTTACggtattgaaaaaaacatgtctCGCTCCTGGATGACCCGGATTCGGCTCATGGAACAGAGCCCCTGAGTGTCTATGGGAAAAAATCTGATATCCCACTTGTGCTGTATTGTTGTGCAGCGGGACCATCACTGGTACTGATTACACATGAATCCAAAATcttatgaagaaaaaacatatttatttaatttgaactttgTGCcttaatatttcctttttctaaaGTGCGTCATAGTCTGATTTTTGTATTCTGTCTGAAgtcagtgtttaaaataaagatatttaaaataatcattggAAGTTTTCCGTGTCAGTCACTCATGCGAGGAGATGTTCCTGTCCTTTCACAAGAACACAGATAAGCATTGATAATAAAAATGGACTCCCA

Function

GO:

id name namespace
GO:0000103 sulfate assimilation biological_process
GO:0016310 phosphorylation biological_process
GO:0004781 sulfate adenylyltransferase (ATP) activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004020 adenylylsulfate kinase activity molecular_function

KEGG:

id description
K13811 PAPSS; 3'-phosphoadenosine 5'-phosphosulfate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175433 lncRNA downstream 172887 6157743 ~ 6158763 (-) True G139496
TU175135 lncRNA downstream 935091 5396339 ~ 5396559 (-) True G139249
TU174884 lncRNA downstream 1747478 4583865 ~ 4584172 (-) True G139039
TU174874 lncRNA downstream 1820343 4507504 ~ 4511307 (-) True G139029
TU174873 lncRNA downstream 1835288 4496162 ~ 4496362 (-) True G139028
TU175564 lncRNA upstream 137444 6482267 ~ 6510125 (-) True G139593
TU175618 lncRNA upstream 656842 7001665 ~ 7073536 (-) True G139639
TU175655 lncRNA upstream 874046 7218869 ~ 7219192 (-) True G139668
TU175760 lncRNA upstream 1110721 7455544 ~ 7458491 (-) True G139752
TU175854 lncRNA upstream 1601229 7946052 ~ 7946521 (-) True G139825
AMCG00002922 mRNA downstream 11870 6297737 ~ 6319780 (-) True AMCG00002922
AMCG00002920 mRNA downstream 103907 6214859 ~ 6227743 (-) True AMCG00002920
AMCG00002919 mRNA downstream 129654 6196974 ~ 6201996 (-) True AMCG00002919
AMCG00002912 mRNA downstream 152449 6173898 ~ 6179201 (-) True AMCG00002912
AMCG00002913 mRNA downstream 187257 6142903 ~ 6144393 (-) True AMCG00002913
AMCG00002923 mRNA upstream 1017 6345840 ~ 6354866 (-) True AMCG00002923
AMCG00002927 mRNA upstream 77181 6422004 ~ 6429440 (-) True AMCG00002927
AMCG00002932 mRNA upstream 300809 6645632 ~ 6737274 (-) True AMCG00002932
AMCG00002933 mRNA upstream 398911 6743734 ~ 6756791 (-) True AMCG00002933
AMCG00002934 mRNA upstream 695457 7040280 ~ 7059888 (-) True AMCG00002934
TU174755 other downstream 2328846 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 2381482 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 3612231 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 5406252 923010 ~ 925398 (-) False AMCG00002752
TU174136 other downstream 5407416 923010 ~ 924234 (-) False AMCG00002752
TU175621 other upstream 717650 7062473 ~ 7066321 (-) True AMCG00002935
TU175710 other upstream 1003988 7348811 ~ 7352821 (-) True AMCG00002945
TU175851 other upstream 1586434 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 2140538 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 2502209 8847032 ~ 8847840 (-) True G140006

Expression Profile