RNA id: AMCG00002926


Basic Information

Item Value
RNA id AMCG00002926
length 2160
RNA type mRNA
GC content 0.51
exon number 19
gene id AMCG00002926
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6410426 ~ 6419383 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCTAAGGGTTCCTATTGCGGGTTCAGCTCTCTGGAGATCGCCTTCATAGTCCTGTTTGTGCTCATGACTGGAGTCAGTGTCGGACTGATCACCCTCCTGGCTGTTAGCTGGAATAATGAGAAACCATCCCAGAGAACCAGTGTGAAACTTTGTGCCACAGGATCCTTCTCTGAAATATCTTCTTCTGCTCCCAAACAAACAGCATCCGATCCCACCGAGAACCCACTTGAGAGTACGTATGTTGTGGGCGTGGGTCGAGCGGACTGCACCGGCCCTGTGGCTCAGGTGCCCCTGATGGGCTACGCCAATTTTGAGCAAACAGCCGCTGGAATCCACACCAGGCTTTTCAGCCGAGCCTTCATAGTGGACGATGGGACCAGGCGTGTTGTGTTTGTGAGCGCTGACATTGGAATGGTTTCTCAGAGACTGAGACTGGAGGTGATGAAGGAACTACAGCTAAAGTATGGGAACCTCTACAGACAAGACAATGTTGTCCTGAGtggcactcacacacactcggGCCCTGCCGGTTACTTCCAGTACACCCTGTTCATGATCACCAGCATGGGCTACATCAAGCCCTCCATTCAGGCCCTTGTAAATGGCATTGTAAAGAGCATCGATAATGCTCATCATAATCTAATACCTGGAAGAATCTTTATCAATAAAGGACAACTGGACCACAGCAATTTGAACAGAAGTCCATATTCTTACCTGAATAATCCCCCGGAAGAAAGGAAAGAGTATCAATCCAACACTGACAAACAGCTGGTGGTGATGAAACTAACTGACTTGGATGGGGTTGGGATCGGTATGCTGagCTGGTTCGCTGTTCATCCAGTGAGCATGAATAACACCAACCAGATGGTGAGCAGCGACAACATGGGCTATGCCTCGTACCTGTTTGAAAAAGAGAAGAATATTGGCTTTCTGCCCGGACAGGGGCCCTTTGTAGCCGCCTTCTCTTCCAGTAATCTGGGCGACGTGACTCCCAACACCAAGGGGCCCCGCTGTCTCAACACTGGGGAGTCCTGTGAGAATCTCAACAGCTCCTGCCCCATCGGGGGGAGAGAAATGTGTGTTGCCTTTGGGCCGGGATTAGACATGTTTGAAAGCACCAAGATCATTGGCGAGAACATCTACAAAAAAGCCAGGGGCAGGACCTGTAAACCAGCGCTGGGCTACAGCTTTGCTGGTGGAACTATTGATGGGGGAGGCGCCCTCAATTTCACTCAAGGGACTGTCGAAGGGGATCCATTCTGGGATGGGGTCCGAGATGCCCTGTTGGGAGCTCCTTCCAATGAAACCCAAGCCTGCCACCACCCGAAACCAATTCTCTTCAGCACCGGAGAGATGACTAAACCTTTCCCGTGGCACCCTGATATTGTGGATGTTCAGATTATTTCCATTGGAAACTTTGCAATCGTGGCGTTCCCTGGCGAAGTGACCACAATGGCAGGGAGACGATTAAGGGAAGCAGTCAAAAAAGAACTGGAAACTCGGTTTTATAATCAAGAGGTGGTGATTGCCGGACTGTGTAATGTCTACACACACTACATCACAACTTATGAAGAATATCAGATCCAGCGCTATGAAGGAGCCTCCACCATCTATGGGCCGCACAGCCTGTCGGCCTACATCCAGCTCTTCAGCGGACTTGCTCGTGCCATTGCTGAGGATAAAGTGAGTGAGCTCCCTCAAGGTCCCGAACCCCCCTTCTTCACCAATCTCTTCTCCTTGCTGCCCCTCGTCCCAGTGGATAAAAATCCTGGCAACACGTCGTTCGGGGAAGTCCTGGAACAGGCCCGGCTGTCGTACAGAGCGggAGAGGTTGTGACAGTCACATTTGTCAGTGGAAATCCCAGAAACTCTGGTGACACGGCTGGGAAGACTTTCCTGACAGTAGAGAAGTATGAGAATCTGACTCAGACATGGAACATAGTTTACACTGATGCATCGTGGGAGACAAgATTTCACTGGATTAAAGGCAGCGGTGCCGAGAGCAACGCCACGGTGGAATGGCACATCCCTCTGTCAGCCCCCTCAGGCGCCTACAGGGTCCGGCACTTTGGCCACTTCAAAGAGAGGAAGGGCCTCTCCCAGGTGATAACGCCATACAACGGGACATCGAGTGTGTTTGAAGTCTTCGGTTAA

Function

GO: NA

KEGG:

id description
K12349 ASAH2; neutral ceramidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175484 lncRNA upstream 99156 6297734 ~ 6311270 (+) True G139531
TU175448 lncRNA upstream 207367 6202844 ~ 6203059 (+) True G139507
TU175447 lncRNA upstream 208956 6201203 ~ 6201470 (+) True G139506
TU175446 lncRNA upstream 210570 6199359 ~ 6199856 (+) True G139505
TU175445 lncRNA upstream 211924 6198270 ~ 6198502 (+) True G139504
TU175538 lncRNA downstream 783 6420166 ~ 6423168 (+) True G139572
TU175611 lncRNA downstream 643140 7062523 ~ 7065465 (+) False G139633
TU175612 lncRNA downstream 643140 7062523 ~ 7066374 (+) True G139633
TU175640 lncRNA downstream 733154 7152537 ~ 7152739 (+) True G139656
TU175654 lncRNA downstream 777495 7196878 ~ 7197097 (+) True G139667
AMCG00002925 mRNA upstream 1331 6397457 ~ 6409095 (+) True AMCG00002925
AMCG00002921 mRNA upstream 80662 6320136 ~ 6329764 (+) True AMCG00002921
AMCG00002915 mRNA upstream 143826 6255170 ~ 6266600 (+) True AMCG00002915
AMCG00002918 mRNA upstream 176271 6228187 ~ 6234155 (+) True AMCG00002918
AMCG00002917 mRNA upstream 197855 6209728 ~ 6212571 (+) True AMCG00002917
AMCG00002928 mRNA downstream 35489 6454872 ~ 6455141 (+) True AMCG00002928
AMCG00002930 mRNA downstream 44330 6463713 ~ 6464276 (+) True AMCG00002930
AMCG00002929 mRNA downstream 137087 6556470 ~ 6575271 (+) True AMCG00002929
AMCG00002931 mRNA downstream 159600 6578983 ~ 6581030 (+) True AMCG00002931
AMCG00002939 mRNA downstream 647472 7066855 ~ 7073538 (+) False AMCG00002939
TU175429 other upstream 257306 6147748 ~ 6153120 (+) True G139492
TU175054 other upstream 1311682 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 2380502 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 2814318 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 3294345 3107458 ~ 3116081 (+) True G138790
TU175613 other downstream 647560 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 957304 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 1503799 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 1618194 8037577 ~ 8044220 (+) True AMCG00002965
TU176130 other downstream 2882229 9301612 ~ 9304840 (+) True AMCG00002998

Expression Profile