RNA id: AMCG00002929


Basic Information

Item Value
RNA id AMCG00002929
length 4794
RNA type mRNA
GC content 0.41
exon number 12
gene id AMCG00002929
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6556470 ~ 6575271 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTTCTAAAGCAGTTACctCTTTTAAACACTTGATTGGGGGGCTGGAAGATGTTTCCAACAAAGCTTATGAAGATGCGGAGGCCAAGGCCAAATATGAAGCAGAGAACGCCTTCTTCTCCAATCTAAAGTTGGTCGATTTCAACATCATCGATACTCTGGGAGTGGGAGGATTTGGCCGCGTTGAACTGGAACGTCAAAGAAAAGCCCTGCGGTGTAACCTAAAGAGGAACTCCCGGCCCACGGCAGCTCGCGCTTATTTTAGGCACTGCGGCACTGGGAGTAAAAACAAGTGTCCCCTTGCCGGGGGCATCGTGTTCACGCTGCCGTGCTTATTGCTAGACAGCAGTGATCGAATGACCTCCGACACCGACTGCTCCAggaaacacaatGTGCAGCTGAAAAGCGATGAAGCCAAAACGTTTGCAATGAAGATCCTGAAGAAGCGGCACATCGTGGACACGCGGCAGCAGGAGCACATCCGCTCGGAGAAGCAGATCATGCAGGAGGCGCACTCGGACTTCATCGTGAGGCTGTACAGGACCTTCAAGGACAGCAAGTACCTGTATATGTTAATGGAGGCTTGCCTTGGAGGAGAGCTGTGGACCATTCTCAGGGACAGAGGTTCGTTTGAAGACGCAACCACTCGGTTCTACACCGCCTGTGTCGTTGAAGCTTTCGCTTACCTGCATTCCAAGGGCATTATCTACAGGGACCTGAAGCCAGAGAACCTCATCCTGGATCACAGAGGTTATGCAAAGCTGGTTGATTTTGGTTTTGCCAAAAAAATAGGATTTGGAAAGAAAACGTGGACTTTCTGTGGGACTCCGGAGTACGTGGCCCCCGAGATTATCCTGAATAAGGGCCACGACATCTCGGCCGATTACTGGTCACTGGGCATCCTGATGTACGAACTTCTGACTGGAAGcCCACCTTTCTCGGGCCCTGATCCtatgaaaacatacaacatCATACTGAGGGGCATCGACATGATTGAATTTCCAAAGAAGATTACCAAAAATGCTGCTAATTTAATCAAAAAACTATGCAGGGACAATCCTTCTGAAAGATTAGGAAACTTGAAAAACGGTGTCAAGGACATCCAAAAGCACAAGTGGTTTGAAGGCTTTAATTGGGAAGGATTGCGAAAAGGAACACTGACACCTCCGATAATCCCCAATGTGACATCTCCCACGGACACCAGTAACTTCGACAGCTTCCCTGAAGACAATGATGACCCGCCTCCGGACGACAACTCAGGATGGGACACGGATTTCTAACCCCATTTCCTCAGCCTGCTTCTGTATTGCCTAGGACAGCTTCTGCAGGACAAAGCTGCGAGCAACAAACTGTAACAAAGAGGGGAATTAAAGAAAAGACGAAGGAAAAGTAAAGCTCTGGGTCACCAAGATGCCTTCACTAATGCTGCCCGGGTTACTGCGGTGGCATTAGACCTTAAGTTTAGGTAACAGCAGGGCTCCTTCAGTGTTTTACCTTCACACGTATTACTGCGCTGGTGGTCCTGGGGCAAGGCcgattctgtttgtttgtttgtttatacctTAGCAGGAAAGTAATGTTTCTTTTGCTGCAAAATCCTGCTCTTCTTTACACCttgtttgaaaaagaaaaaaaaaaaaaaaaaaatggagaagTACGATATTTAACGCCAGTATTCCTCTTTGTCTTTCGGATGCGAGGACTCTTCGATGTAAACTGCAGAAGCGGTTGATTTATGATCCTAGCTGCCTACAGTACTGATCTCGGGATGCTCCCGTACGTTGGCGTGAGTCGAGCCACCTTCGCTCTCATGCCAGGACCACAATGCGATCGGACCGCTCGTGTCAGAGCAGTTAGGACCGTGTACTCTCTCTGAAGTGCTCATGACGAAgctgaatgtgtttatttctgagtcagtggaatatatataaatgtgtttatctcTGGTGTGTCAACACTGATCTTGAAAGcacaaatgttatgtttttgatttcctTTCTCTACTAAGGGTTGTGGAACTTATGAACACAGCTGAGAAGGGCATTGTTATTGAACACTTCGCCACAGACCTGTGTCACGGCCTTAGCGCGGGCCGGTCGCTCGTGCTGGCAGTTGTGGGTCAGAATATGCAATTTATTCATGTTCAGCAATGCGTTTAGAAGGATATCCAGATGCTTCAAATTGAGGATATAATATCCCACATCCCTAGAACATACTACATGCTAGTTTGAGATCACGCTaatttaatgacatttaatttaatggcGAGTGAGAACTTTAATATGAAGAGAAGATGTAATGGTGTTCCTGAATTGACACTTAAAAATCAGGCAGAATTGGAAGTCTAAATTGAGAGGcgtgaaattaaaaaaggactTTGTGCCGGGAAATGAATAACGTCTTACAGATCTCCAATTCACACCAGACTCATGTGGTGTCGCACATTTTGAAAGCTCAGCAACGAAGAAAAATCCTGTACGGAATTGATTATAATGTTAACAAATTCATCTTGATGAGAGTTTTACAGACGTGCAGTCTACGCTTTACCACCAGGTGGCAGACTGTTACAGGAGTACAGGACAGGATCTGATAAAAGATCTATTTATTTCATGATGACAGAGCGGTTATAAACTCAAGTATGTTACAAGAGCACCACCTGCCTAATCAGAAGATCTTTAAAGGCGGCACAGAAAAAACTATTATCTTATGTTGGAGTTCTCTTGTGGGGAATGGTGACAGTTATTGTTCAGATATACTTATGCTCATTTCAGCTGATCAACAATGGTAGCATttacatttagtattttttatatttaaatttattctAAAGGTGACACTTAGAAGCTGGGTCCCAGTCATTTTGAGTGTCCGTTCTTTTCAGTATAGATGTACTTCATATTGACACAAATCTGAAACTGAATGACCGATGTGCAATGAAAGTTAAAAGAATTCCATATTCTAGGTGCAAAAGCTCCATCATTTACACTGTGCTGGATTAATAAGTGTAGAAGACTTATTCTACAGTAGGACCACaggtaaatgtgtgtgtaaatagaTAGTTTAGTGTCAATATTTTGTGATACATGTAcaacgttttatttttagagtATTATGGCATTATGACTTCATTTGAATATTTGAGACTCCGTGCATTGTCTTTGGTTTCATCAGACTTGAATGATCtcatatttgtttaacattatcAACTCAAAGACTGTATTCACTCCCACACTAGTTTAGACTCATCCATTACCTGGCTGTTTGGCATTGTTGCAAGTGCCTTAAATTGATGGCATCCAAAAATAACTTACAAATTTGGTGTAATGCTGCATGACGAAGACAAACACCTCAAAATGTTGTCCTTTCTTAGCTTGCTGCTTTTTTACGGTTCTTTCAGCTATTTATAAGCCTTTCttacaataaaatgtgactttcaaaacattaagTGATTCCCTTATTTCTGTGGCTAAGCTGTAAATCTGTTAATTAGATGCTGCATCatttctgtgaaatgtataCTATTTGTGCAGGTTAACTTAAACAAGTAACTATACATCCTACTGGGTTAGATGTATTCCTAGTTTGCTGTGCAGTTGTGATTGGCTGCCCCGCACATGCAATAAACACAAGTGTGCACTTCAATGAATGTATGCAGGCCATGACCTTACGTGAATCCTTTAATGATTCAGACTCAATTAAGATATTAAGCTGTATACCTGGACTACCCAACATAAAGGTGCTGCCCCATTTAACACTGAATATGTTTCtacagtataaaaatacatcataGAGTAGTATAATATATGATTTACATATTACTGGGTAGTATTTCTAGTAGCTTGGAGCAACATATTCATTGATATGTCCACAAGACATTTATGCTACAAATTAAGTGAGTAGGAATGTAAATCTCTCGTTACCAtagtcattttcttttgtgagACATATCGGTGCAGTACATTAAAGTCTGGGATAATAATGAATGTGATTCATATCCTTGGGTAACAGCTCCCTCGTTCAGACAGTCTGCGTAGGATTGCACAGTGCAGCTAGAGAGATAGGGTTCTCTCAGTGCTCTGTTATTAAAGCATCCTAAAGGGACAATAATAATCCACAATTTGAAACACTATGCTGTGTACAAGCATTGGAGACTTTTTTAAGACTGTAAACCGGAGGACTTTCCACAATATGAAATGGATGCTATTTACGGTGAGTAAGAATAATCAAATGCATGAAATTGTAATCCAAAACTACTCCTCTTAAGGGGCAGTTTTCAAAACACGACAGAAGTGTAGCTCAATCATGGCTCTGCACAGCATAATAGGAATATTGCTTCAAGTTACTTTCTTGTATATGCAACTCAGTTGTTCCAATATGTTTCAAATCACGGTGAAAACCTCATTTACATCCTTGACCACTTGTCTGCAATAAAGCAGTCATATTGCTGGAACTAGAAAAGAGAATGGCAGTTTCAGCACATCATTTTGACCAGAAAGAAGTTGCTTTGTCCAGTGCACAATAGCTACTTGCTGTCCCTCGATGTGTTAACCTGTTTCAGGCTATTTTGCTTGCTGTAATAGTTAACATATACATGTCTTTCCcccaccaaaaacaaaacaaaaaaacaaaagtcatacTGTGGTTATCATTTGCACTCAACGTTGcctaaaatatttattttgtctaataaGCTACTTTTtcattctgttctgtatttttcGCTGCAACTTTCATTGCAGAGTGCCTGTTGTATACTTTATAAAGCTAAAATAAAGACAAGTTACTTTTGGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175538 lncRNA upstream 133302 6420166 ~ 6423168 (+) True G139572
TU175539 lncRNA upstream 137672 6418438 ~ 6418798 (+) True G139573
TU175484 lncRNA upstream 245200 6297734 ~ 6311270 (+) True G139531
TU175448 lncRNA upstream 353411 6202844 ~ 6203059 (+) True G139507
TU175447 lncRNA upstream 355000 6201203 ~ 6201470 (+) True G139506
TU175611 lncRNA downstream 487252 7062523 ~ 7065465 (+) False G139633
TU175612 lncRNA downstream 487252 7062523 ~ 7066374 (+) True G139633
TU175640 lncRNA downstream 577266 7152537 ~ 7152739 (+) True G139656
TU175654 lncRNA downstream 621607 7196878 ~ 7197097 (+) True G139667
TU175809 lncRNA downstream 1334078 7909349 ~ 7910999 (+) False AMCG00002960
AMCG00002930 mRNA upstream 92194 6463713 ~ 6464276 (+) True AMCG00002930
AMCG00002928 mRNA upstream 101329 6454872 ~ 6455141 (+) True AMCG00002928
AMCG00002926 mRNA upstream 137087 6410426 ~ 6419383 (+) True AMCG00002926
AMCG00002925 mRNA upstream 147375 6397457 ~ 6409095 (+) True AMCG00002925
AMCG00002921 mRNA upstream 226706 6320136 ~ 6329764 (+) True AMCG00002921
AMCG00002931 mRNA downstream 3712 6578983 ~ 6581030 (+) True AMCG00002931
AMCG00002939 mRNA downstream 491584 7066855 ~ 7073538 (+) False AMCG00002939
AMCG00002938 mRNA downstream 500003 7075274 ~ 7077227 (+) True AMCG00002938
AMCG00002937 mRNA downstream 556905 7132176 ~ 7152164 (+) True AMCG00002937
AMCG00002940 mRNA downstream 591247 7166518 ~ 7189805 (+) True AMCG00002940
TU175429 other upstream 403350 6147748 ~ 6153120 (+) True G139492
TU175054 other upstream 1457726 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 2526546 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 2960362 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 3440389 3107458 ~ 3116081 (+) True G138790
TU175613 other downstream 491672 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 801416 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 1347911 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 1462306 8037577 ~ 8044220 (+) True AMCG00002965
TU176130 other downstream 2726341 9301612 ~ 9304840 (+) True AMCG00002998

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012180 True 3095 mRNA 0.45 19 NC_007124.7 40815012 ~ 40955599 (+)
grasscarp (Ctenopharyngodon idella) CI01000012_02251322_02337964.mRNA True 4949 mRNA 0.45 25 CI01000012 2251137 ~ 2339368 (-)