RNA id: AMCG00002930


Basic Information

Item Value
RNA id AMCG00002930
length 564
RNA type mRNA
GC content 0.65
exon number 1
gene id AMCG00002930
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6463713 ~ 6464276 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCTCCCTCATTGGTCGCCGTGTGCAGCCGCTGCGCCGCGCCTCGGCATCCTTGCAGGAGCTGGAGGGGCGCTTGTGTTCGGCAGCCGCTCAGTCCGCAGCGACCCTGAAAGCACGCCGGACCCCCGCCAGTGAAGCCCACCAAGGCGCCGCCCGTCTTAGTCACGGTGGGCGCGTCGACGGAGCCTTGCAACAAGTCGCCAGCACACTTTGGGTAAAGTTTGCCTGGCTGCCGGCGCAGACAGCACGGACTATGGGCACTTTGCGGGATCTCCAGTACGCGCTGCAGGAGAAGATCGAGGAGCTGCGGCAGCGGGACGCGCTCATCGacgagctggagctggagctggaccAGAAGGACGAGCTGATCCAGAAGCTGCAGAACGAGCTGGATAAGTACCGCTCGGTCATCCGGCCGGCCACCCAGCAGGTCCACAAGCAGAGCGTCCTGCAGGAGCAGCACCGCACCAAGAGGCAGGCGATCTCCGCCGAGCCCACCGCCTTTGACATCCAGGACCTCAGCCATGTCACGCTGCCCTTCTACCCCAAGAGCCCGCAGTAG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0030553 cGMP binding molecular_function
GO:0004692 cGMP-dependent protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175538 lncRNA upstream 40545 6420166 ~ 6423168 (+) True G139572
TU175539 lncRNA upstream 44915 6418438 ~ 6418798 (+) True G139573
TU175484 lncRNA upstream 152443 6297734 ~ 6311270 (+) True G139531
TU175448 lncRNA upstream 260654 6202844 ~ 6203059 (+) True G139507
TU175447 lncRNA upstream 262243 6201203 ~ 6201470 (+) True G139506
TU175611 lncRNA downstream 598247 7062523 ~ 7065465 (+) False G139633
TU175612 lncRNA downstream 598247 7062523 ~ 7066374 (+) True G139633
TU175640 lncRNA downstream 688261 7152537 ~ 7152739 (+) True G139656
TU175654 lncRNA downstream 732602 7196878 ~ 7197097 (+) True G139667
TU175809 lncRNA downstream 1445073 7909349 ~ 7910999 (+) False AMCG00002960
AMCG00002928 mRNA upstream 8572 6454872 ~ 6455141 (+) True AMCG00002928
AMCG00002926 mRNA upstream 44330 6410426 ~ 6419383 (+) True AMCG00002926
AMCG00002925 mRNA upstream 54618 6397457 ~ 6409095 (+) True AMCG00002925
AMCG00002921 mRNA upstream 133949 6320136 ~ 6329764 (+) True AMCG00002921
AMCG00002915 mRNA upstream 197113 6255170 ~ 6266600 (+) True AMCG00002915
AMCG00002929 mRNA downstream 92194 6556470 ~ 6575271 (+) True AMCG00002929
AMCG00002931 mRNA downstream 114707 6578983 ~ 6581030 (+) True AMCG00002931
AMCG00002939 mRNA downstream 602579 7066855 ~ 7073538 (+) False AMCG00002939
AMCG00002938 mRNA downstream 610998 7075274 ~ 7077227 (+) True AMCG00002938
AMCG00002937 mRNA downstream 667900 7132176 ~ 7152164 (+) True AMCG00002937
TU175429 other upstream 310593 6147748 ~ 6153120 (+) True G139492
TU175054 other upstream 1364969 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 2433789 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 2867605 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 3347632 3107458 ~ 3116081 (+) True G138790
TU175613 other downstream 602667 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 912411 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 1458906 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 1573301 8037577 ~ 8044220 (+) True AMCG00002965
TU176130 other downstream 2837336 9301612 ~ 9304840 (+) True AMCG00002998

Expression Profile