RNA id: AMCG00002931


Basic Information

Item Value
RNA id AMCG00002931
length 1336
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00002931
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 6578983 ~ 6581030 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACAACTCCACATGTATAAATCCGGCACCAGGACGCCTGGATCTTCAGAAAGTCGGCCACGAACTCCAGCTGAAGGCTTTCACAGGACTATACTGCAGGCAGCCCGACCGCACTGCGCTTCTTCTGCCACATCGCCGTTTCACCGCAAAGCTCGACCATGCATCTGCCTGTACCTGTGCTGCTGGCGGTGTGTTTTGCCCTGGGCGGGCACTGTGATGCCGGGCTGTTCAACTCCAATGCCATCAAGAACCTGCCCGGCGGAGCCCCGAACCCCGGGCACCCGGTCAGCGCCAGCCCGGACGTCATGACGTACGACAGCGACAACAAGAATGTGGCCATTGACACCTACCAGAGCTACACTTGCGCGGAGGACGAGGAGTGCGGCGCCGAGGAGTTCTGCTTCGGGTCCCGGGGGCTCTGCCTCTCCTGCCGGAAGCGGAGGAAGCGCTGCGCCCGGGACGCGATGTGCTGCCCGGGGAACCGCTGCAGCAATGGAGTGTGCTTGCCCGCTGATGCCGATGCAACGTTTCATGCTGGCATGGAAGAGAGTTTTCCTGACAGTTTTGCACCAGAATATCATTCCACCGTGGAGCCCCATCCCAGGCAAACTACTGTCCCTGCCAGACCGCAAACGCTTAAAGGTCAGGAAGGCGATGTGTGTCTGAGGTCCTCTGACTGCTCAGATGGCCTGTGCTGCGCTCGCCACTTTTGGTCCAAGATCTGCAAACCGGTCCTGAAAGAGGGACAGGTGTGCACCAGGCACCGAAGGAAAGGCACCCATGGTTTGGAGATATTCCAGCGCTGCGACTGTGGGGATGGTCTGGCCTGCCGGACGCAGAAGGGAGATCATAGCAGCAAGTCCTCCAGACTGCACACATGCCAAAGACACTGATCACTGCCTCCTACACGGCAACAAGAAGATGTTCATACGGCCCTTGGAAGGTTTAAAGACTGATGCTTTGGTTTTGTCGGAGCATTTCAAATGCTAGAAGAAGAGTTTacattctctgttttgtttttaatggcagaGAAGTGTTGATTGTTTCTCTTTTATGGAACTCCAGCTTCACATGAATTGCAGtaaattactgtattgtaaatattgaGGGTGGCACTTATGTTGTAATTCTGTTTATGGCAACACAAGTATTTTATGAGAAGGTGCTGCGTGGGTATCCTAAAACAAATTCTACCATactattgtatatttgtaaacaaTGTGATTATATGGATATTTAGAATCTGCTataaatgcctttattttttacatgaaataagaaatgtaaagatatttaagtgttttattgaaacataataaaaaaccTAACTAATGAA

Function

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0021879 forebrain neuron differentiation biological_process
GO:0090090 negative regulation of canonical Wnt signaling pathway biological_process
GO:0003197 endocardial cushion development biological_process
GO:0043697 cell dedifferentiation biological_process
GO:0061011 hepatic duct development biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0001889 liver development biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0007398 ectoderm development biological_process
GO:0030334 regulation of cell migration biological_process
GO:0030903 notochord development biological_process
GO:0005576 extracellular region cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
K02165 DKK; dickkopf

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175538 lncRNA upstream 155815 6420166 ~ 6423168 (+) True G139572
TU175539 lncRNA upstream 160185 6418438 ~ 6418798 (+) True G139573
TU175484 lncRNA upstream 267713 6297734 ~ 6311270 (+) True G139531
TU175448 lncRNA upstream 375924 6202844 ~ 6203059 (+) True G139507
TU175447 lncRNA upstream 377513 6201203 ~ 6201470 (+) True G139506
TU175611 lncRNA downstream 481493 7062523 ~ 7065465 (+) False G139633
TU175612 lncRNA downstream 481493 7062523 ~ 7066374 (+) True G139633
TU175640 lncRNA downstream 571507 7152537 ~ 7152739 (+) True G139656
TU175654 lncRNA downstream 615848 7196878 ~ 7197097 (+) True G139667
TU175809 lncRNA downstream 1328319 7909349 ~ 7910999 (+) False AMCG00002960
AMCG00002929 mRNA upstream 3712 6556470 ~ 6575271 (+) True AMCG00002929
AMCG00002930 mRNA upstream 114707 6463713 ~ 6464276 (+) True AMCG00002930
AMCG00002928 mRNA upstream 123842 6454872 ~ 6455141 (+) True AMCG00002928
AMCG00002926 mRNA upstream 159600 6410426 ~ 6419383 (+) True AMCG00002926
AMCG00002925 mRNA upstream 169888 6397457 ~ 6409095 (+) True AMCG00002925
AMCG00002939 mRNA downstream 485825 7066855 ~ 7073538 (+) False AMCG00002939
AMCG00002938 mRNA downstream 494244 7075274 ~ 7077227 (+) True AMCG00002938
AMCG00002937 mRNA downstream 551146 7132176 ~ 7152164 (+) True AMCG00002937
AMCG00002940 mRNA downstream 585488 7166518 ~ 7189805 (+) True AMCG00002940
AMCG00002943 mRNA downstream 644759 7225789 ~ 7267878 (+) True AMCG00002943
TU175429 other upstream 425863 6147748 ~ 6153120 (+) True G139492
TU175054 other upstream 1480239 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 2549059 4029524 ~ 4029924 (+) True G138941
TU174694 other upstream 2982875 3428689 ~ 3596108 (+) True G138888
TU174568 other upstream 3462902 3107458 ~ 3116081 (+) True G138790
TU175613 other downstream 485913 7066943 ~ 7073536 (+) True AMCG00002939
TU175723 other downstream 795657 7376687 ~ 7379487 (+) True G139720
TU175799 other downstream 1342152 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 1456547 8037577 ~ 8044220 (+) True AMCG00002965
TU176130 other downstream 2720582 9301612 ~ 9304840 (+) True AMCG00002998

Expression Profile