RNA id: TU175710


Basic Information

Item Value
RNA id TU175710
length 1384
RNA type TUCP
GC content 0.41
exon number 4
gene id AMCG00002945
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7348811 ~ 7352821 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCCTTGTTCAACCCAAATCAAAcaatgaaaagttattttatttaaatttcaccATCTGCCTTATTCTACTTCAGAACAGTAACCCTGCCAGCGCAAGCGAAGCACACGGCCGTGCTCCTGCAGCGCAGATGAGCGCAGGCCTGCCcggatctgcgcggctccaccaatccGATCGCTTGGATTCTGCAGccctgcgcagaactgcagaaatctgcgctGCAAGAACTTGATCCATGTACGACCATGTTTGAATTTGAGTCGACGGTCCGCCGTTAGAGACGCGTTATGCCTGCAAACTCCTCGGTCACTGTGCGGTTTGGGCCGTACGAGTCCTGTGGGATTGTTGAGCACAGGACATCCCGTCTGCAAGGCCTGCAAGCTGCTCTGGCAGAGGATGGACACCAGTGCGTCCTCCAGAGGATCCCTGACTGGAACACAGTGGAGCTCATAGTGAACGGAGAGCTCGTATTTCATTGCAATATCAAAGATCTTGACTTTGGAGGTGACGGCAAATTAGACCCACTGTGCCAAGATGCTAAAACAGCAGTGAAGAAAGCTTACTGAtcactttccctttttttctggTGTAAATCTGGACATATCAGAAATGGTCCAAAACACCCCTTCTCTTATGTTGGGTTTGTCCGACAGATCTTTCATTCTGATtaaacacatctcagtttaaCACAAATGTGTTGGTCTTGTGGTAATACAGAAAGTGACAGGATATTGGAGCTATTAGAAATGTGGATCTCATCTCATTCTCAATATGccttttcctttaattgttACAAACATACAATTCTTCAACCCAGAGTAGGGTTAGGCATCCAGGCTTTCATAAAGGTTGTACTGTCTTAACTGAATTGGGTATAGATCTCTAAAGGCCTAGCTTGATTCTGGTGTTATTAGTAGCCCTATcgttataaaatatgaaattataaaatgatatgAAAGTTTATATGAAGGAAAGAACTGTTTGTTTTCAAGCCAAATACAAACTGTAGACCTGTGACTTGTACTACACATAAACttcataacaatatatatttattttactttgttctgCATCTAATTTATTCCATATTCAATATTCTAATATTCAAGTACTACTTTGCATAACAATTACTGTTTGACGGTGATAGGAAAGGTTAAATGATGTCTAGTTCAGACTTagactgattttaaaaatattacccTGTCTTTGAATGTTTCCTCActtgacattttgtttcatgaTGTATTGTGAGAAACTGTTGCATAGCTGTTCTCCCTATAATTTTTCACCAGCATgacattttcagacattcaaagaaaaatacCACCATGATGCCTTTTGTAACTGCCATGCTTAAAAATCTTTCAATTAAACAAGACTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175655 lncRNA downstream 129619 7218869 ~ 7219192 (-) True G139668
TU175618 lncRNA downstream 275275 7001665 ~ 7073536 (-) True G139639
TU175564 lncRNA downstream 838686 6482267 ~ 6510125 (-) True G139593
TU175433 lncRNA downstream 1190048 6157743 ~ 6158763 (-) True G139496
TU175135 lncRNA downstream 1952252 5396339 ~ 5396559 (-) True G139249
TU175760 lncRNA upstream 102723 7455544 ~ 7458491 (-) True G139752
TU175854 lncRNA upstream 593231 7946052 ~ 7946521 (-) True G139825
TU175906 lncRNA upstream 758204 8111025 ~ 8115245 (-) True G139867
TU175922 lncRNA upstream 828469 8181290 ~ 8181576 (-) True G139881
TU175946 lncRNA upstream 877548 8230369 ~ 8231218 (-) False G139902
AMCG00002941 mRNA downstream 150822 7189337 ~ 7197989 (-) True AMCG00002941
AMCG00002936 mRNA downstream 267188 7077934 ~ 7081623 (-) True AMCG00002936
AMCG00002935 mRNA downstream 282461 7062561 ~ 7066350 (-) False AMCG00002935
AMCG00002934 mRNA downstream 288923 7040280 ~ 7059888 (-) True AMCG00002934
AMCG00002933 mRNA downstream 592020 6743734 ~ 6756791 (-) True AMCG00002933
AMCG00002948 mRNA upstream 10231 7363052 ~ 7371613 (-) True AMCG00002948
AMCG00002947 mRNA upstream 49760 7402581 ~ 7407518 (-) True AMCG00002947
AMCG00002951 mRNA upstream 81430 7434251 ~ 7446572 (-) True AMCG00002951
AMCG00002950 mRNA upstream 107111 7459932 ~ 7468014 (-) True AMCG00002950
AMCG00002956 mRNA upstream 464940 7817761 ~ 7826227 (-) True AMCG00002956
TU175621 other downstream 282490 7062473 ~ 7066321 (-) True AMCG00002935
TU174755 other downstream 3346007 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 3398643 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 4629392 2718208 ~ 2719419 (-) True G138741
TU174137 other downstream 6423413 923010 ~ 925398 (-) False AMCG00002752
TU175851 other upstream 578436 7931257 ~ 7938241 (-) False AMCG00002970
TU176000 other upstream 1132540 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 1494211 8847032 ~ 8847840 (-) True G140006
TU176114 other upstream 1883837 9236658 ~ 9237730 (-) True G140015
TU176570 other upstream 2948979 10301800 ~ 10331372 (-) True AMCG00003049

Expression Profile