RNA id: AMCG00002959


Basic Information

Item Value
RNA id AMCG00002959
length 456
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00002959
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7828091 ~ 7829718 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTTTCTACCAGGAGCTCAGACACAATCTCCTTGCTCCACAACTGCAGGGAACTGTGTCTATGATTTCACAGTGGAGACCCTGCAGGGTCAGCCTGTATCACTGAGGAAATACAAGGGCAAGGTGCTGCTCATTGTCAACTACCTCCAATTGAATGCACTCATGGAAATGTTTGTCGGTACCAACTTCATGGTCCTTGGATTCCCGTGTAACCAGTTTGGTCTCCAGGATCCTGaGGAAAATCATGAAACATTAAATGTCCTGAAGTATGTTAGGCCAGGTGGTGGATTTATCCCCaagtttgaggtgtttggaAAAGTGGAAGTGAATGGACAATATGAAGATGCTCTCTTCACATTTGTAAAGAAATTCTACTGGTCTCCTATTAAAGTGAGTGACATACGATGGAACTTTGAAAAGTTTTTGATCCAAGCTGATGGAGTTCCATATAAG

Function

GO:

id name namespace
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175654 lncRNA upstream 630994 7196878 ~ 7197097 (+) True G139667
TU175640 lncRNA upstream 675352 7152537 ~ 7152739 (+) True G139656
TU175612 lncRNA upstream 761717 7062523 ~ 7066374 (+) True G139633
TU175611 lncRNA upstream 762626 7062523 ~ 7065465 (+) False G139633
TU175538 lncRNA upstream 1404923 6420166 ~ 6423168 (+) True G139572
TU175809 lncRNA downstream 79631 7909349 ~ 7910999 (+) False AMCG00002960
TU175856 lncRNA downstream 123408 7953126 ~ 7953340 (+) True G139827
TU175863 lncRNA downstream 168495 7998213 ~ 7999259 (+) True G139832
TU175867 lncRNA downstream 173084 8002802 ~ 8003057 (+) True G139836
TU175868 lncRNA downstream 173597 8003315 ~ 8003645 (+) True G139837
AMCG00002955 mRNA upstream 6628 7812509 ~ 7821463 (+) True AMCG00002955
AMCG00002952 mRNA upstream 94554 7695359 ~ 7733537 (+) True AMCG00002952
AMCG00002949 mRNA upstream 327501 7489371 ~ 7500590 (+) True AMCG00002949
AMCG00002946 mRNA upstream 403010 7412109 ~ 7425081 (+) True AMCG00002946
AMCG00002942 mRNA upstream 481143 7313942 ~ 7346948 (+) True AMCG00002942
AMCG00002953 mRNA downstream 13826 7843544 ~ 7845870 (+) True AMCG00002953
AMCG00002954 mRNA downstream 18260 7847978 ~ 7863421 (+) True AMCG00002954
AMCG00002960 mRNA downstream 79534 7909252 ~ 7920908 (+) True AMCG00002960
AMCG00002961 mRNA downstream 108714 7938432 ~ 7946524 (+) True AMCG00002961
AMCG00002966 mRNA downstream 125498 7955216 ~ 7998025 (+) True AMCG00002966
TU175723 other upstream 448604 7376687 ~ 7379487 (+) True G139720
TU175613 other upstream 754555 7066943 ~ 7073536 (+) True AMCG00002939
TU175429 other upstream 1674971 6147748 ~ 6153120 (+) True G139492
TU175054 other upstream 2729347 5096731 ~ 5098744 (+) True G139176
TU174764 other upstream 3798167 4029524 ~ 4029924 (+) True G138941
TU175799 other downstream 93464 7923182 ~ 7926832 (+) True G139784
TU175890 other downstream 207859 8037577 ~ 8044220 (+) True AMCG00002965
TU176130 other downstream 1471894 9301612 ~ 9304840 (+) True AMCG00002998
TU176137 other downstream 1495770 9325488 ~ 9330464 (+) True G140030
TU176317 other downstream 1948532 9778250 ~ 9780452 (+) True G140189

Expression Profile