RNA id: TU175890


Basic Information

Item Value
RNA id TU175890
length 3794
RNA type TUCP
GC content 0.36
exon number 5
gene id AMCG00002965
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8037577 ~ 8044413 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTGGAGGAGCGTGCACTAGCTGCTCTTTTACTGCGatataaaattaatgttaaagcAATGCTTATTTAATCAAAGTCGTAAAGCATGCAAGCTATCATTCTGCAAAGTGCAGGAGAGTGGGATAATGCAGCGCCCCTGGGATGGAAATGGGCTCAGTATGCCCGCAGAAAACAGCTCTTCAACAACAATAAGGCAATGCAACCTAAGCAGGGTCAAACATTTTAAGATCCAGCAACAAAAACTAAAGCAGCtgaccTCCACACGTGCTGTTTGGCGGTGACGTCACTTCCCGTTGCCCGTGTGTTGTGCTTCCTGGCGGAGGGAGGGGACCGTGCTGACGGCTGGGAGGACAGACGGAGAGACGAGAGAGCTTTGCAAAGGGAGataaagagaaggaaaagacCCGGGTTTCCACCGTCCCTCACCTTTACTACTTTAACAGTTGATATATAACCGTTTCGGGTGAAATGTCGTCCAGTCGTCAGCACAGTGAAAGCCGGGCCATTCCGACCAGGACGGTGCTGATCAACGACACAACGCAGCTACCTCACAATTACTGCACCACCCCTGGGGGCACTTTATTCTCCACTACTCCAGGAGGTACCAGAATCATCTATGACCGTAAGTTCCTGTTGGATCGGCGCAATTCCCCCATTGCCCAGACTCCTCCAGCCCACCTTCCTGACATCCCTGGAGTGACCAGTCCAAATACcgcaattgaaaataaaaagaatgagGCAAATAATGTGAATAACCATGAGGGCAAGCCAGGTGTGGGAGATGATGCTCAGTTTGAGATGGATATCTAACATGAAGAATCAAAGTGAAGAACTTGACATCATCTGGTACCTGTGTGCCAGTGGCTTGGCTTGAACCATGCTGTGAGCCCTCACAGCCATCTCATTAAAGTCTCTCTTAGCCTGCTGAGtgcaaaatgtatgttatgAGATAAATCTATAATTATTTCAGTCCAACTCAGAAAACACATAGATTAATGTGGGTTGTTCCATCTGATTTGATTTCAGAATCACTTATAGAATATAATCTTAAACATGGATTTCCAAATTTCACAATTGATATGTAGGGTAAGAtctgtatataaaacacaacaatgagggaaaacaacaactaaataaatgagtacaaattcatgcaaattaaagtaaagtaaataaagcaataaattGAGTTATTTTTCCAGGTGATAAAATGTCAAACTTAATTTTTCTTGACATTGCCTTAGCCACACTTTTCTGGAACATCCCTGATTGGTCCACTCCTAATGTGTGTGCTGCTTTCTGTGGAACAAAAGTCAGACTGTGGATTCAGCCCAGGGAAATTACTCAATTCAAAGCCAATTGATTCTGCTTTTCATTGGTTGTGCCTGAAGCCCATTGCTTTAATGGTGGGTTGAATCCCAGTGTTCTGTGGGCTCTAgttgttgtaaatgtttttcctgGAAATTTCCAGgctgcctgttttgttttgttttctgttatcaGCTAttgttccattattattatttttaacttgaaaacaacatttcagaCTCTTATTTAGTTTCTGAATGATGATTTGCCTAGCACATTAAATAAAGGGAAATCTGTTGCAGTAGGCTGCTTTTATTTGTAAGAGAGGCAGAATACTGCATTGTCATTCCAAGACCAGAATATATTTAGATCACAAAACATAACTTagacatgcattttgtttgtttgaaatgttctgtgtgGTACTGTTGTCTAGGTAATGATACTGGTCAAAGCTGGTTTAAAAATTCAACAGCCAACTGGTTCTGCTAACAGTACTGCTTAGATAATGGTTGAACAAAGAAATAACTGGATtctaattaatgttttgttctgGTTTTTCTTGTTACAGgccaaaaaaaagtttttgaaagCGAgaatcatttatgttttttttttttttttttaataaaaatatggaccttattattttgttttaattgcatttcaaaagcttTGTGTTAGAATTAAAACTACAAATGCAAGCTAATTGGGAAATTAtgataatgtaattttacaggAAATCACATATTAGTATTtgacaccatttatttttatttcaaaaaagcATTTAAGGTTTTTCTAAGGATGAATTATGCATCTTGGTGCAAGTTATAAAATAACTGATCTTACTATTGAAATGCAAGGAAAATTTGGGATggctgctttttgtttgtttattttgttttgggttttaaatGTGGACTTAGTTTGTTGAAGAAATTTGCCAGATGTtgagaaatgtgaaatacaaaattgatTTCATGAATCTACAACAATTAAGCATGGTAATGAGAAAGCTATTCCCAAGATGCACTTTTTTTCTGATTGAAttctgcacacatacacaaacaaaatctgtgaCCAGTATAAACCATTAATGGCTTAATTGTCTCTGTAGGTAAACTATATGTTTATTATAGAGGGCCTTTAACTGGGGGGAAACAGGTGGGATTAAAAGCAACAGGAGCTATATTATTTTGTCCTGTATAAGTTACCAAAATAGCGGGTGATTCTTGAGAATTAGAAGATTTGCAACATAAAGGATTTTTTCCTCAAacaatggaaaattaaaaccaGGTAGTCCCTTGACAATAGTTCCTAAAACAACCAGGAACTCAAGTTCTTCATTTgtaagtgtttatttctgaatcAGATCAAAAAGTTTGAAAACTTGAAATGTCTATGCATTTGTTTCAGCTGTGTAATTCTTTGTTCTGACAAACATTATTGAAAGACATGCGTGTTTATCTTACTGTCGAGtcacaaaaccaaaaaggtaaaacatttataaataactaaacaaaacatgactTACAATGAAACTAccagaacaggaaaaaaatgtatgaagtgACAAATCCAAATATTTgccaaactaaaataaaaagtgagatTTACTTTTAAGCAGAAGTTTGAGAGCAAGAATCTCAATCTTAAAGTCATTTAAGTGTTTCCAAAACATCTCAGAGAGGTGATTATTGAAACCTCACATTTGATTTTCACTTATTTGGatatagttttaatatattaaacagaaTTGTGCGCCCATGCCTTATGTCAGTTAACTCAACTAAAAGGTAATTCCTGATCGGAAAATTGGGACACTTTTCAGGCTGAACAAAAATAGATTCTAGCCTACAATTCCagaatttagtttagttttttgtttttattgttttatttattttgccagtaaaatacatattcagcatTTATCGCAGGatgatattaatacatttattaatattcagaaaatacattaggCTTTTGTCGAATTATACCACTGTTAGAATCTGTTCATGATACCTGTACAGAGGTGGTTTTCCGTTTTAACAGTGAtcagatcatttttattttactttattactcAAATGGATGCTAAATTCAACAAGTTGTTAAAGCAGCCCCTTTGTGGTACATATACAGTACTTCAATTCTGAAGTTATTTATTGAATGTCCTGTCTTGGTTTCTTCCCCCATAACTAAATGACATACTTCATGAATTTGTAAAGCAGTGTTTGCATTTGTCATAAGCACACTTCAGATATAAAAGGAAACCAGCTGTTGGCCTATTTGGCCTTAACTTTTTTACATTATGGAGCAAACGGAAgttgttttaaaactgaaagctccatatgatttttttttttttttcaaaacctttGTAATAATACAGTGTATTTTCAAGGAAATGCCAATGCCAGTGGACACTGTTACAACAAGATCAATAAAAGTCCTTGTGATAAGGATGTCATAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175883 lncRNA upstream 16176 8020020 ~ 8021401 (+) True G139850
TU175869 lncRNA upstream 32127 8003904 ~ 8005450 (+) True G139838
TU175868 lncRNA upstream 33932 8003315 ~ 8003645 (+) True G139837
TU175867 lncRNA upstream 34520 8002802 ~ 8003057 (+) True G139836
TU175863 lncRNA upstream 38318 7998213 ~ 7999259 (+) True G139832
TU175921 lncRNA downstream 137085 8181305 ~ 8181534 (+) True G139880
TU175954 lncRNA downstream 235436 8279656 ~ 8280129 (+) True G139906
TU175976 lncRNA downstream 451932 8496152 ~ 8496965 (+) False AMCG00002982
TU175977 lncRNA downstream 453794 8498014 ~ 8499226 (+) True G139915
TU175982 lncRNA downstream 455164 8499384 ~ 8507103 (+) True G139916
AMCG00002966 mRNA upstream 39552 7955216 ~ 7998025 (+) True AMCG00002966
AMCG00002961 mRNA upstream 91053 7938432 ~ 7946524 (+) True AMCG00002961
AMCG00002960 mRNA upstream 116669 7909252 ~ 7920908 (+) True AMCG00002960
AMCG00002954 mRNA upstream 174156 7847978 ~ 7863421 (+) True AMCG00002954
AMCG00002953 mRNA upstream 191707 7843544 ~ 7845870 (+) True AMCG00002953
AMCG00002974 mRNA downstream 26764 8070984 ~ 8081794 (+) True AMCG00002974
AMCG00002973 mRNA downstream 92520 8136740 ~ 8172504 (+) True AMCG00002973
AMCG00002976 mRNA downstream 162171 8206391 ~ 8213095 (+) True AMCG00002976
AMCG00002977 mRNA downstream 185427 8229647 ~ 8234400 (+) True AMCG00002977
AMCG00002983 mRNA downstream 432472 8476692 ~ 8487793 (+) True AMCG00002983
TU175799 other upstream 110745 7923182 ~ 7926832 (+) True G139784
TU175723 other upstream 658090 7376687 ~ 7379487 (+) True G139720
TU175613 other upstream 964041 7066943 ~ 7073536 (+) True AMCG00002939
TU175429 other upstream 1884457 6147748 ~ 6153120 (+) True G139492
TU175054 other upstream 2938833 5096731 ~ 5098744 (+) True G139176
TU176130 other downstream 1257392 9301612 ~ 9304840 (+) True AMCG00002998
TU176137 other downstream 1281268 9325488 ~ 9330464 (+) True G140030
TU176317 other downstream 1734030 9778250 ~ 9780452 (+) True G140189
TU176681 other downstream 2710681 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 3165353 11209573 ~ 11212111 (+) True G140613

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU55629 False 2935 TUCP 0.39 3 NC_047597.1 15793428 ~ 15797204 (+)