RNA id: TU175851


Basic Information

Item Value
RNA id TU175851
length 2628
RNA type TUCP
GC content 0.37
exon number 4
gene id AMCG00002970
representative False

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7931166 ~ 7938241 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACGTTCATATCTAATTAGACATTTACTGTCTATACTTTTTAATACCTAATGTATTGAAAGTGCATTTACCAATAGATATATGCATGGGTGAATGTCTTCTGGAGCTAATTGGGACAGTGTCGTTtctgtactggactggactcgCCAAACTAATTGATCTGGTTTACTGGCACTTCAgcaagcttttaattttttaatattctacTATTGTAAAACAGAATTTTAGCAATTCtctcaaatgtaattaattgtaatgtttgtgtgtgtgtgtgcacgtccTTTAAAGTTTAATATGATAATGATGAAACAGTCCATGCAAGTGCACCTAAAATTGCATCACTCTTTTAGTATAAAAAGAAACTCATTCAAAAAGACTGTAGGCTATAACTAGTTTTGACTGGAACGTGGCCTGTGGAAGACGTGATGTGgtctgcagctctgtgtggTTAATCATCTGACTGATTGGGAAATGCGTGGTTTTTGAATGAGTAGTAAACTGGCTTCCTTACACTGTGGATGAGTCACTATGCGAGCGCTATGAAAACCTGAGAAAGAAACGTGACAGATCTAGCGTAGCGCAGATTCACGCAGGTCTGGGaggatctgcgcagctccaccaatgggagcggtgtGATTCTGCAGagctgcgcagaactgcggaaatctgcgctgcaAGAACGCGACCATTCTAGAACGAGGATCACTGTGATAAAATGGCAGCCTCctcgtcatcatcatcagccgGGGGAGTCAGTGGCAGCTCGGTTACTGGGTCTGGGTTTAGTGCTTCAGAACTGATCCCTCCCCGAAAAGTCCTGTACACCTACCCCAAAGGGGCTGGGGAAATGATGGAAGATGGTTCAGATCGATTCTTGTGCGAGTCTGTATTCAGCTACCAAGTTGCATCAACACTGAAGCAAGTAAAACATGATCAACAAGTGTCTCGTATGGAGAAGCTGGCGAGCTTGGTGGAAGAGCTTGAAGCTGATGAGTGGAGGTACAAACCAATTGAACAGCTTCTGGGTTTTACTCCTTCATAAGAACCGAACTCAGATGAAACTGAAAAGCCATCACGTGGGGACTGTTGAAGAATCAGGGGAAGCATCTGTGAAGCATTTGGAAAtcttgaaaaagtattcaaCAGTAAAGACCtgaaagacttttttttctttattgaaactcccaacaaaacaactttttaatttatttaagattaaaacataataaataaagtaaattttGATatcatatattgaaatattcaatcctgtttatttttggttttaacatCTCAGGATTTTAAAACCTCTGTTGACTGACATCATTTATCATCcaagtgtttttcaaaataataatgtattaaaatatccATCTACAGATAATTTAggctgatgttgtttttttagaggAAATGTCTGTTGTTGAGCACTGTAGGGACAGCTGTGTTTTAATAGCCCAGTCCTGCCATTCACAGGTGTTTACACAGGTAATTTCCAAGTAAAACTTTGTGACCTCCATTAAAACACACTCATTTAACTGTCTCAGAGTGGGAAGTGTGTAATAGTGAGATGCAGATTGTGTGATCTTGGCTCTTGCAACAGTAAGTTTAATCTAGAGGGATAATGTCATTGAAACCTTAACCAACCTCTGGTAGCTGGGGTCCCATCTTAAATTTGTTGGATTTTAGGCCCAGATTAGTCTTTGCATTTCTATCCCCTTTTTATCATAAGGTTTGACCAAAACAAGTATCATAGTAAGAATTAagtgaaacatatttttcttttatatcaCAATCTCTTTACATTTATTAGATAAGGGATCATTCACTCAGCATTGTTCTCAGACAGTGGATCACATTAAAAAACGCTTTTGTATGGTTATGTCTTTTGTCACTGTTTCTCTTACACAAAGACAATCATTTCACCAAAGTGTAACTCTGATTATTTCTCCAGTGCACAGACTTTAATCTCAGTGCCTTCGAGGTGACCTCCTAAGACTTCAGGGTAAACTATTGTGAATGTCATAAACTGTATACAAAGCTATCCTTGATGTTTTATAGCCCCCTTGAATCCACAGGtagtctctctcacacagtacAAGACAGGGTTCTTGTTTTTATCATCCTGAAATCATATAATTCGGCTGTACAATTcctgcaaaaatacaatatgcatttcttttacTTAACTTACTTATAGATactacatttagattttttaaagcaaatcagCCTATGCCTGTGaagtactgaaaataaaatggttgaCTTGCACAGATGCATGTTAGTCAGTTGTTttgttctgccttttttttcacCTAATATGGTTtcttaattcagtttaaatattttgtttttgtctgagcCAGGTTACatcttggtttattttgtattgttttcctgaATCTTTTTACTCtacatattttaatactgtatttaacaGCAATATTTCTTACTCCCTTTGCTGTTAAAAGATATTGTAATAAGAAATGTAAACGtattaaaatactgattattattattaaggtaaACCAAAACTCCAGTTTAATCAGTTATTAGTTTTAACGAGAGGAGGGAGGGGTGAAGTACACTTAATCTACACTAAAAACTTACATGGGTTATTAGGGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175760 lncRNA downstream 472766 7455544 ~ 7458491 (-) True G139752
TU175655 lncRNA downstream 712065 7218869 ~ 7219192 (-) True G139668
TU175618 lncRNA downstream 857721 7001665 ~ 7073536 (-) True G139639
TU175564 lncRNA downstream 1421132 6482267 ~ 6510125 (-) True G139593
TU175433 lncRNA downstream 1772494 6157743 ~ 6158763 (-) True G139496
TU175854 lncRNA upstream 7811 7946052 ~ 7946521 (-) True G139825
TU175906 lncRNA upstream 172784 8111025 ~ 8115245 (-) True G139867
TU175922 lncRNA upstream 243049 8181290 ~ 8181576 (-) True G139881
TU175946 lncRNA upstream 292128 8230369 ~ 8231218 (-) False G139902
TU175947 lncRNA upstream 292128 8230369 ~ 8234284 (-) True G139902
AMCG00002962 mRNA downstream 3662 7926010 ~ 7927595 (-) True AMCG00002962
AMCG00002964 mRNA downstream 20302 7909549 ~ 7910955 (-) True AMCG00002964
AMCG00002963 mRNA downstream 29896 7895353 ~ 7901361 (-) True AMCG00002963
AMCG00002957 mRNA downstream 57655 7869601 ~ 7873602 (-) True AMCG00002957
AMCG00002958 mRNA downstream 88049 7833091 ~ 7843208 (-) True AMCG00002958
AMCG00002967 mRNA upstream 59461 7997702 ~ 8005740 (-) True AMCG00002967
AMCG00002968 mRNA upstream 68080 8006321 ~ 8010936 (-) True AMCG00002968
AMCG00002971 mRNA upstream 74611 8012852 ~ 8021402 (-) True AMCG00002971
AMCG00002972 mRNA upstream 84406 8022647 ~ 8025932 (-) True AMCG00002972
AMCG00002969 mRNA upstream 95214 8033455 ~ 8038071 (-) True AMCG00002969
TU175710 other downstream 578436 7348811 ~ 7352821 (-) True AMCG00002945
TU175621 other downstream 864936 7062473 ~ 7066321 (-) True AMCG00002935
TU174755 other downstream 3928453 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 3981089 3937764 ~ 3950168 (-) False AMCG00002828
TU174506 other downstream 5211838 2718208 ~ 2719419 (-) True G138741
TU176000 other upstream 547120 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 908791 8847032 ~ 8847840 (-) True G140006
TU176114 other upstream 1298417 9236658 ~ 9237730 (-) True G140015
TU176570 other upstream 2363559 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 3702575 11640816 ~ 11647619 (-) True G140758

Expression Profile