RNA id: AMCG00002972


Basic Information

Item Value
RNA id AMCG00002972
length 1133
RNA type mRNA
GC content 0.47
exon number 3
gene id AMCG00002972
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8022647 ~ 8025932 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATTAACTGTTTCTCCAACTAGTAGCACCTTGGACTCAGAAAATGGACACACCAGTTTATCTCAAGGGAAGATGGACAATTACACCTTCTCTTCCTACTTCCAGCACTCTCTGCCTGTAGCGACCATATTCATCTTTGCCTATATCCTCATCTTCTTCCTGTGCATGGTTGGCAATAtccttgtttgtttcattgtgttAAGAAGTAAGCAGATGCGAACTGTCACAAACATTTTCATCTTGAACCTAGCCATCAGTGATCTGCTCGTTGGGATATTCTGTATGCCTACTACACTAGTTGACAACTTGATCACAGGTTGGCCATTTAACAACACCATGTGTAAAACAAGTGGCCTGGTTCAGGGAGCGTCAGTGTCGGCTTCAGTCTTCACCCTGGTGGCAATCGCTGTCGAAAGGTTTCGTCGTATCGTTTACCCTTTCCGTCAGAAGCTAACACTTAAGAAAGCCACGATCACCATTGCAGTCATCTGGGTTCTAGCTGTCATCATCATGTGTCCCTCTGCTGTGACCTTAACTGTCTCGAAAGATGACTTGCATTTCATGGTAGATGACTATAACAACACCTACCCCCTTTACACTTGCTGGGAGGCCTGGCCTGACCAGGATATGCGCAAGATCTACACCGCAGTCCTATTTTGCCACATCTATGTGGCCCCACTAACTCTGATTGTCATCATGTATGCCCGCATCGTCATCAAGCTCTTCAAGTCTCCAGCCCCCATAAGGGACTCCCTCTCAGAAGACAATGATGGACGTAAGGTGTCCAAAAAGAAAGTCAGAGTTATCAACATGCTGGTGATCGTGGCCTTACTCTTCACTGTGTCCTGGCTGCCCTTATGGGCTCTGATGTTGCTGACAGACTATGGCAACTTGACGGCAAGCCAGCTGAACATTGTGACTGTGTACATCTTCCCCTTTGCCCACTGGTTGGCCTTTTTCAATAGCAGTGTAAACCCCATCATATATGGCTATTTCAATGAAAACTTCAAGAGAGGGTTCCAAGCAGCTTCCAAGTTCCAGCTCTGCTCCTTGGAAATGGAGATATATGACAGAAGAGTCAGTGGCAGAACTCAGAACCGCATCTTTGTGGAGGTCAAGCCCAGCAGCACCCAT

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K04240 NPFFR1; neuropeptide FF receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175854 lncRNA downstream 76126 7946052 ~ 7946521 (-) True G139825
TU175760 lncRNA downstream 564156 7455544 ~ 7458491 (-) True G139752
TU175655 lncRNA downstream 803455 7218869 ~ 7219192 (-) True G139668
TU175618 lncRNA downstream 949111 7001665 ~ 7073536 (-) True G139639
TU175564 lncRNA downstream 1512522 6482267 ~ 6510125 (-) True G139593
TU175906 lncRNA upstream 85093 8111025 ~ 8115245 (-) True G139867
TU175922 lncRNA upstream 155358 8181290 ~ 8181576 (-) True G139881
TU175946 lncRNA upstream 204437 8230369 ~ 8231218 (-) False G139902
TU175947 lncRNA upstream 204437 8230369 ~ 8234284 (-) True G139902
TU175950 lncRNA upstream 204437 8230369 ~ 8234284 (-) False G139902
AMCG00002971 mRNA downstream 1245 8012852 ~ 8021402 (-) True AMCG00002971
AMCG00002968 mRNA downstream 11711 8006321 ~ 8010936 (-) True AMCG00002968
AMCG00002967 mRNA downstream 16907 7997702 ~ 8005740 (-) True AMCG00002967
AMCG00002970 mRNA downstream 85420 7931166 ~ 7937227 (-) True AMCG00002970
AMCG00002962 mRNA downstream 95052 7926010 ~ 7927595 (-) True AMCG00002962
AMCG00002969 mRNA upstream 7523 8033455 ~ 8038071 (-) True AMCG00002969
AMCG00002975 mRNA upstream 19283 8045215 ~ 8048434 (-) True AMCG00002975
AMCG00002981 mRNA upstream 148980 8174912 ~ 8176893 (-) True AMCG00002981
AMCG00002978 mRNA upstream 157523 8183455 ~ 8195892 (-) True AMCG00002978
AMCG00002980 mRNA upstream 172744 8198676 ~ 8203314 (-) True AMCG00002980
TU175851 other downstream 84406 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 669826 7348811 ~ 7352821 (-) True AMCG00002945
TU175621 other downstream 956326 7062473 ~ 7066321 (-) True AMCG00002935
TU174755 other downstream 4019843 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 4072479 3937764 ~ 3950168 (-) False AMCG00002828
TU176000 other upstream 459429 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 821100 8847032 ~ 8847840 (-) True G140006
TU176114 other upstream 1210726 9236658 ~ 9237730 (-) True G140015
TU176570 other upstream 2275868 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 3614884 11640816 ~ 11647619 (-) True G140758

Expression Profile