RNA id: AMCG00002978


Basic Information

Item Value
RNA id AMCG00002978
length 2479
RNA type mRNA
GC content 0.41
exon number 16
gene id AMCG00002978
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8183455 ~ 8195892 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCTTTGTTGACTCCTGCTGTGTTTTCTGAAAGCAGTCTAATACACTTCTAAtccatgtaaatgtattgtgcGCTATACTCTTCATCATGAAAACAAGTGATGCTTTTACACATTCACTGGCTCTTCTCCTTCTGGTTTGGGCTCGGGCAAATGtgTACTCCGAAGCATCTAAGTTTGAGACAGGGACTCTGTATGAGTACCTCTACACTGTGGATGTAGTCCTGGAGCCGACTGCTGAGCATGACCGGATGAGATCTGGATTCTCAATGGAGGCTGTGGTACAGATCCATTCACTGTGGAGAAATCCAAGCAATGAGCAGGACCTGCTGGTCCAAATCAAAtttcaagACCTTAAGGTTATGAGCAACCATAATGGAAGTCAATCCATCTTCATGGATTCGTCAGTAGAAGAGTTACTTGGACAACAGCACCTACATGATTTAAGAAAACCTGTCTTGATTCACTCCATTGGCGGAAAACTGGAAGACGTGTTTGCTGCTAATGAGACCAACAAGTTTATTTTGAATCTGAAAAGAGGGCTTGTTAGTGTTTTCCAGATGCAGACGTATTCTGGAACAGCTACAGAGAATGATGTGACTGGTAGATGCAAGGTTTTGTATGAGGTTTCTGGGaagcaaatcattaaaataaaagatttccAGAGCTGTGAAAAGGAAGATTTTGGCTATACCTCCACAAACCAGGTGTTTGGAGTTAATGTGAATGGAACCAGTAAGTGTATCTATTTAATGGAAAATGACATCATCAAGTCAGTGAAATCCGAGGAAAGCCACCTGATTATGTTGAATTTGAAATCTACAATTGGCACTAAGATCAATTCCAGTCCTTTCCTCATTGATGCAGCTGCAGCAGTCCTGACCCCAGAATCCCTTGGTGCACTTTCATCTTTCCTGGATTTCACAAAAGTAAAGCAGGGTCCTCTCTTGGAGAGGTTTCTGTACgcctgtgctttttctgcaCGGCCATCAACATATTTGCTTAGCACTCTCACCAATATTCTTTCTGGTAAAATTGTTCAAAAAGAAGTACAAGAGACTGCCATCATCACACTGGGTTCAGTGATTGGTAAAATGTGCTCTGCAAATAACTGTACATCGCAGGAAGTAATAAGAGCTAAAAACTTAATTGTGGACAGACTGAAATCCTCTACTGAAGAATTTGCAGTAAAGGCATGTCTTTTAGCCTTGAAGAGTGCCTGTCTTCCAGAAACAATCCCCCTTATTCTTCAGTACACCGAGATGTCCAACTCTGTCTCCATTACTGCTCTGTCAGCACTGCAAAGGTTCCCCGCAAAGTATATTAACAATGAGGTTAAGGAGCAAATGAGAAATATTTTTTATCAGAGGAAGAAACACTTTATTGAAACAGTTCGACTGGCAGCTGCAGAAATTCTCCTGAACAGCGACCCTCAGTATGTAGACATCAGAAATATTATAGAAGCAATACCGAGAGAGGGGCCGGAACCATCCAGATATTTATCATCAAAAATTCAAAGTTGTCTTAATTCTGATCATGGTGCAAGGAAAATCATTGTTGAAGTTTTAAAAGATTCAAACTTAAATAACTACAACCATCTATCCAGGCTTGGCAGTTCTTCAACTTATTCTGGAAATTTGACagCAACCAAGGATATGGTCACCTCTTATAATGTTGACTTCCTCTTTTCCGAGCATGGatttttaagaaaaagtaaCAGTAATTTCTACACCTACAGCCATGGAAATAAACTACTCTCTGTACAGgtTTCTATGGAAGCAAAAGGTCTTGATGGTTTATTCGGTGAAGCTGCTGAGGAAGAGGAGATCATGGCAGGAATGTCAACAACATTACTGGACGTGCAGCTCCGGCCAGTGGTCTTTTTCCAGGGCTATGCAGATCTGATGGAGAAATATTGGTCAGCCAATGGAGAACCACAGCATATACTAATGGCAAATATCCTGCCAATCGACCATCTGCAGGTGTTTTCACTTCAGTCTGGTTTGCCAGTGCTTATCCACTTTCAAGGAGGGCTCACGGTTGATGTCACAAGTAGCACCGAGCTCAGTCTGTTCAGCCAAGAATCAAAGAGCAGAGTCACAAACAGGGGCACCTTGGCAATCAGTGGCACAATAGAGATTGATGCTTCTTTCATAAATGTTGGAGTGGAAACCAGAACAGAAGCTCAGacccagtttgtttttgttaacacTGTGCGCTTCTCAGAAATGCCAGTATTGTTCtgtttgcaaatgaaaaaggaaCCATACCCTTACAgGGAGTCCGTTGTGGTATATGAAAGGTTTCCCAATGGGAAGAACTTCACTTTGCAGAAGAGAAGAAAGTTTACTTTCCCAGGAGAAGAGGTCTCACTACACAAGAGAAATTCTGAGATGTGTAAGAAATTGCTATAGCAAGAAGAGTGAATTCTCCATACATTGAActtacagagaaaaaataaagcactgaatAAGAATGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175922 lncRNA downstream 1879 8181290 ~ 8181576 (-) True G139881
TU175906 lncRNA downstream 68210 8111025 ~ 8115245 (-) True G139867
TU175854 lncRNA downstream 236934 7946052 ~ 7946521 (-) True G139825
TU175760 lncRNA downstream 724964 7455544 ~ 7458491 (-) True G139752
TU175655 lncRNA downstream 964263 7218869 ~ 7219192 (-) True G139668
TU175946 lncRNA upstream 34477 8230369 ~ 8231218 (-) False G139902
TU175947 lncRNA upstream 34477 8230369 ~ 8234284 (-) True G139902
TU175950 lncRNA upstream 34477 8230369 ~ 8234284 (-) False G139902
TU176008 lncRNA upstream 298962 8494854 ~ 8495297 (-) True G139937
TU176035 lncRNA upstream 421543 8617435 ~ 8618101 (-) True G139960
AMCG00002981 mRNA downstream 6562 8174912 ~ 8176893 (-) True AMCG00002981
AMCG00002975 mRNA downstream 135021 8045215 ~ 8048434 (-) True AMCG00002975
AMCG00002969 mRNA downstream 145384 8033455 ~ 8038071 (-) True AMCG00002969
AMCG00002972 mRNA downstream 157523 8022647 ~ 8025932 (-) True AMCG00002972
AMCG00002971 mRNA downstream 162053 8012852 ~ 8021402 (-) True AMCG00002971
AMCG00002980 mRNA upstream 2784 8198676 ~ 8203314 (-) True AMCG00002980
AMCG00002979 mRNA upstream 19004 8214896 ~ 8229129 (-) True AMCG00002979
AMCG00002986 mRNA upstream 309797 8505689 ~ 8508352 (-) True AMCG00002986
AMCG00002985 mRNA upstream 333303 8529195 ~ 8542960 (-) True AMCG00002985
AMCG00002987 mRNA upstream 374326 8570218 ~ 8570907 (-) True AMCG00002987
TU175851 other downstream 245214 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 830634 7348811 ~ 7352821 (-) True AMCG00002945
TU175621 other downstream 1117134 7062473 ~ 7066321 (-) True AMCG00002935
TU174755 other downstream 4180651 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 4233287 3937764 ~ 3950168 (-) False AMCG00002828
TU176000 other upstream 289469 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 651140 8847032 ~ 8847840 (-) True G140006
TU176114 other upstream 1040766 9236658 ~ 9237730 (-) True G140015
TU176570 other upstream 2105908 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 3444924 11640816 ~ 11647619 (-) True G140758

Expression Profile