RNA id: AMCG00002980


Basic Information

Item Value
RNA id AMCG00002980
length 676
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00002980
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8198676 ~ 8203314 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCATGGAGGCATCAGTAAAGAAGAGAATGGAGATATTGGAGGACGCTGTTTCCACTGCTATCAATCGCAAGGACGCCCTCAAGAACATGAAAAAAGTCGAAGATGTGTCTTTTAATAATCCTCTGCGTTTGACTGAGGATGCTGGGAAACTGCCAGCCAAAGGCAGCCCTCGGTTTGGCACGCTGAGTCACCATTCGTTTTTCTCCCGACACAATCCTCATCCTAACAGGGTGACACATATCCAGGACCAGACTCTGATGACAGTTTTGGGGGCACCTGGAGTGAAGATGCCTTATGGGGAACTTTATGGAAATCAACCACAAAAACAAGGCACAGCCCTGCTGTCTGATGCCTGGAGGGAGGAGCTAAAAGATCTCGCTGCTAAAGTCTGTCTCTCAGCCCCTCTTGGAACAGATGGCAAAAAAACTAACCACCAGGCAGAAGAAGGTGCCGTCCGCCGCAGCACCCAGTACTCAGCCCGCACTGGACGGATCATCCCGTCCTCATCTCTTCCCTCCAGCAGGCGTTCATCGGGGAAGCACTCCAGGACCGGAGGCCAGGCAACGTCTTCAGCGCTCTATGACCAGGAACTAATGgtcCTGGAACTGCTCTGCCAGATCCTCCAAACCGACTCTTTATCTCAAGTCCAGCAGTGGCTTTTGTTAGCAGGCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175922 lncRNA downstream 17100 8181290 ~ 8181576 (-) True G139881
TU175906 lncRNA downstream 83431 8111025 ~ 8115245 (-) True G139867
TU175854 lncRNA downstream 252155 7946052 ~ 7946521 (-) True G139825
TU175760 lncRNA downstream 740185 7455544 ~ 7458491 (-) True G139752
TU175655 lncRNA downstream 979484 7218869 ~ 7219192 (-) True G139668
TU175946 lncRNA upstream 27055 8230369 ~ 8231218 (-) False G139902
TU175947 lncRNA upstream 27055 8230369 ~ 8234284 (-) True G139902
TU175950 lncRNA upstream 27055 8230369 ~ 8234284 (-) False G139902
TU176008 lncRNA upstream 291540 8494854 ~ 8495297 (-) True G139937
TU176035 lncRNA upstream 414121 8617435 ~ 8618101 (-) True G139960
AMCG00002978 mRNA downstream 2784 8183455 ~ 8195892 (-) True AMCG00002978
AMCG00002981 mRNA downstream 21783 8174912 ~ 8176893 (-) True AMCG00002981
AMCG00002975 mRNA downstream 150242 8045215 ~ 8048434 (-) True AMCG00002975
AMCG00002969 mRNA downstream 160605 8033455 ~ 8038071 (-) True AMCG00002969
AMCG00002972 mRNA downstream 172744 8022647 ~ 8025932 (-) True AMCG00002972
AMCG00002979 mRNA upstream 11582 8214896 ~ 8229129 (-) True AMCG00002979
AMCG00002986 mRNA upstream 302375 8505689 ~ 8508352 (-) True AMCG00002986
AMCG00002985 mRNA upstream 325881 8529195 ~ 8542960 (-) True AMCG00002985
AMCG00002987 mRNA upstream 366904 8570218 ~ 8570907 (-) True AMCG00002987
AMCG00002988 mRNA upstream 368274 8571588 ~ 8580373 (-) True AMCG00002988
TU175851 other downstream 260435 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 845855 7348811 ~ 7352821 (-) True AMCG00002945
TU175621 other downstream 1132355 7062473 ~ 7066321 (-) True AMCG00002935
TU174755 other downstream 4195872 4001650 ~ 4002804 (-) True G138932
TU174734 other downstream 4248508 3937764 ~ 3950168 (-) False AMCG00002828
TU176000 other upstream 282047 8485361 ~ 8494596 (-) True G139933
TU176103 other upstream 643718 8847032 ~ 8847840 (-) True G140006
TU176114 other upstream 1033344 9236658 ~ 9237730 (-) True G140015
TU176570 other upstream 2098486 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 3437502 11640816 ~ 11647619 (-) True G140758

Expression Profile