RNA id: AMCG00002982


Basic Information

Item Value
RNA id AMCG00002982
length 1988
RNA type mRNA
GC content 0.41
exon number 4
gene id AMCG00002982
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8493005 ~ 8496965 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCTGCTCGCCTTTCCCGCAGccctgcgctgctccaccaatgggatcgtgGCGATAcagcagatctgcgcagaatgTGTGTCACTGGACCGCGACCAGAGCTGCGCTGGAGACTGTGGGCGGACTTTAGTGACGTCACGCAGCAGCCCTCGAAGGATGCGCATCTCTGCaaaactgtgcaaaactgcgCAGGCCTCCGGAAATGTGCTGTACGTAGTACTTCCTGGATGTAGCGGCATTTCAGAAGTCGTTGGTTGCGGGATTCACGCTGCGACAATGTTGCCCTTCACAGGTCTGTTTCTTCGGTGTAATGCCGGAGGGCTGCTGAAAAGCGCCCCCCTGTCGCTGGCCGCGGCCCGGCTGTGCAGCTCCAGCCCGGTGAAAAACCCCGTGGTTTATTTTGACATCGCCGCGGACAACGAGCCTCTGGGGAGAGTCACCTTCGAGTTGAATGCTGATGTGGTCCCCAAAACAGCAGAAAACTTCCGAGTCCTCTGCACAGGAGAAATGGGCTTCGGGTACAAAGGATCGATATTCCACCGTGTGATTCCGCAGTTCATGTGCCAGGTTGAATGGGAAGCATGTCGTTTTCGGCAACGTAATGAAAGGAATGGATGTGATCTCAAAAGTGGAAAAATTAGGATCTCGATCTGGGAGCACTTCCAAGAAGATAGTCATCACCGAGTGCGGACAACTCGAATAGCTCCACTTTGATTTTCAAAACTTGTTGCAACTGTGaataaaaatacttcaaatatgtatatatttaaggtATTTCTCAAGTTTGTTTTCCACTGGCTCATGTTtagaaataacaatttaaataaatgagaaatattAGTCTTGGAGACAGGGCATTATTTACACCTTCTCTCATCTCTCCTTCAAAACTATTTAGCTGATCGCTACAGGATACCTCAAAAAGCCTctagcaaaaaatatattttccatacaAAGTTTCTCTTGAATCCTGACAAGgttgaatgtgaaatataataaacCTACTGGGAGTTGGGATCATGTCTGGGCTTTTAAAAGAATCCTGATGGTCTTATtagaagaaattaaattgtaattattatattaaagtaCATAGGAGTTTGATATTTAACACACTTGGTATTTCCTGTAACAAATCTACATTACATGAAGCCTTTGGTGTTACAcaagcatattacaaatatttttcaggCCACTTCACTGGTTTAAGAAATTAACATTGCTCCAGTTGACGAACTATATGCATGCAACCAACAACTAAAATGTCACTTGTcaattttgcttttcttctatGGATGGTACTTAATATGTTAGATTAACCAAAAGCTAAAATATAATGGAGACTTGTATTATTATCCTAGTATTATAGTGTGTTAGTTTTATGCTCACTTAacgaaaaaaaacatacttcaaaCCCAAGCTTCATTAGTGATTGCTGTGTAAATGATCCTGTGAGAAAACGAATTTATAATTTGTTGATGCCCTAAAAACTCATGGTAATTAACTGAATTTATTAGGCCTTTGTATGCTAGCCCTTGTTAATGTTTCCTGGTAGTGCTCTGACAGCTTTTTTTAGATTCTTGTTCCAGCATGGCTTCCTTCCCTCTGGTTCAGGATATGGCATCATGCTTCTGGTTTACATTTATTCATAAAACACCACATACATCAATTCAATGACCCTTGCACTTCAGTTATTCATGCACAAGCACATTTAAAGGTATGGTAAAACAATGCATATAAAAACTGTCCCAATACTGTTTTTATGAGTTCCAGGAACTCCTctaaacaatacacaaaatGAAATCCCAAGCATCTGACTGCACCGAGAAAGGAATTAGGGTGTAGCTAACTTAGTTGCTAGCAAGACAACTTTCTCTGAGCAGCTGTGTGACGcatatttaaaatggtattGATTTCACCCGGTTTGTAATGTCTGAAGCAATTGTCAATCTCACTTGTTTAGTTAGAATCTAATTGTTTACACAATTG

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU175954 lncRNA upstream 212876 8279656 ~ 8280129 (+) True G139906
TU175921 lncRNA upstream 311471 8181305 ~ 8181534 (+) True G139880
TU175883 lncRNA upstream 471604 8020020 ~ 8021401 (+) True G139850
TU175869 lncRNA upstream 487555 8003904 ~ 8005450 (+) True G139838
TU175868 lncRNA upstream 489360 8003315 ~ 8003645 (+) True G139837
TU175977 lncRNA downstream 1552 8498014 ~ 8499226 (+) True G139915
TU175982 lncRNA downstream 2922 8499384 ~ 8507103 (+) True G139916
TU175984 lncRNA downstream 11415 8507877 ~ 8508483 (+) True G139917
TU175985 lncRNA downstream 39618 8536080 ~ 8536374 (+) True G139918
TU175986 lncRNA downstream 46265 8542727 ~ 8543283 (+) True G139919
AMCG00002983 mRNA upstream 5212 8476692 ~ 8487793 (+) True AMCG00002983
AMCG00002977 mRNA upstream 258605 8229647 ~ 8234400 (+) True AMCG00002977
AMCG00002976 mRNA upstream 279910 8206391 ~ 8213095 (+) True AMCG00002976
AMCG00002973 mRNA upstream 320501 8136740 ~ 8172504 (+) True AMCG00002973
AMCG00002974 mRNA upstream 411211 8070984 ~ 8081794 (+) True AMCG00002974
AMCG00002984 mRNA downstream 57117 8553579 ~ 8564616 (+) True AMCG00002984
AMCG00002989 mRNA downstream 88032 8584494 ~ 8635277 (+) True AMCG00002989
AMCG00002990 mRNA downstream 145453 8641915 ~ 8642438 (+) True AMCG00002990
AMCG00002991 mRNA downstream 243276 8739738 ~ 8770076 (+) True AMCG00002991
AMCG00002992 mRNA downstream 298345 8794807 ~ 8817964 (+) True AMCG00002992
TU175890 other upstream 448785 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 566173 7923182 ~ 7926832 (+) True G139784
TU175723 other upstream 1113518 7376687 ~ 7379487 (+) True G139720
TU175613 other upstream 1419469 7066943 ~ 7073536 (+) True AMCG00002939
TU175429 other upstream 2339885 6147748 ~ 6153120 (+) True G139492
TU176130 other downstream 805150 9301612 ~ 9304840 (+) True AMCG00002998
TU176137 other downstream 829026 9325488 ~ 9330464 (+) True G140030
TU176317 other downstream 1281788 9778250 ~ 9780452 (+) True G140189
TU176681 other downstream 2258439 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 2713111 11209573 ~ 11212111 (+) True G140613

Expression Profile