RNA id: AMCG00002986


Basic Information

Item Value
RNA id AMCG00002986
length 279
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00002986
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 8505689 ~ 8508352 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACGACCCAAAGGTGAAGGCCTGACTCCATATCAAGGGAAGAAAAGATGCTTTGGTGAATATAAATGCCCCAAGTGCAAGAGGAAGTGGATGAGTGGAAATTCCTGGGCCAATATGGGACAAGAATGTATCAAGTGCCACATCAATGTTTACCCACACAAGCAGCGCCCCCTGGAGAAGCCTGATGGCTTGGATGTGTCGGACCAGAGCAAGGAGCACCCTCAGCACCTGTGTGAAAAATGCAAAGTTCTTGGCTACTACTGCCGCCGAGTGCAATAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176008 lncRNA downstream 10392 8494854 ~ 8495297 (-) True G139937
TU175947 lncRNA downstream 271405 8230369 ~ 8234284 (-) True G139902
TU175950 lncRNA downstream 271405 8230369 ~ 8234284 (-) False G139902
TU175946 lncRNA downstream 274471 8230369 ~ 8231218 (-) False G139902
TU175922 lncRNA downstream 324113 8181290 ~ 8181576 (-) True G139881
TU176035 lncRNA upstream 109083 8617435 ~ 8618101 (-) True G139960
TU176102 lncRNA upstream 341317 8849669 ~ 8850559 (-) True G140005
TU176104 lncRNA upstream 424418 8932770 ~ 8932969 (-) True G140007
TU176107 lncRNA upstream 642464 9150816 ~ 9156562 (-) True G140009
TU176112 lncRNA upstream 727670 9236022 ~ 9236302 (-) True G140014
AMCG00002979 mRNA downstream 276560 8214896 ~ 8229129 (-) True AMCG00002979
AMCG00002980 mRNA downstream 302375 8198676 ~ 8203314 (-) True AMCG00002980
AMCG00002978 mRNA downstream 309797 8183455 ~ 8195892 (-) True AMCG00002978
AMCG00002981 mRNA downstream 328796 8174912 ~ 8176893 (-) True AMCG00002981
AMCG00002975 mRNA downstream 457255 8045215 ~ 8048434 (-) True AMCG00002975
AMCG00002985 mRNA upstream 20843 8529195 ~ 8542960 (-) True AMCG00002985
AMCG00002987 mRNA upstream 61866 8570218 ~ 8570907 (-) True AMCG00002987
AMCG00002988 mRNA upstream 63236 8571588 ~ 8580373 (-) True AMCG00002988
AMCG00002993 mRNA upstream 402083 8910435 ~ 8967149 (-) True AMCG00002993
AMCG00003001 mRNA upstream 765861 9274213 ~ 9281237 (-) True AMCG00003001
TU176000 other downstream 11093 8485361 ~ 8494596 (-) True G139933
TU175851 other downstream 567448 7931257 ~ 7938241 (-) False AMCG00002970
TU175710 other downstream 1152868 7348811 ~ 7352821 (-) True AMCG00002945
TU175621 other downstream 1439368 7062473 ~ 7066321 (-) True AMCG00002935
TU174755 other downstream 4502885 4001650 ~ 4002804 (-) True G138932
TU176103 other upstream 338680 8847032 ~ 8847840 (-) True G140006
TU176114 other upstream 728306 9236658 ~ 9237730 (-) True G140015
TU176570 other upstream 1793448 10301800 ~ 10331372 (-) True AMCG00003049
TU177068 other upstream 3132464 11640816 ~ 11647619 (-) True G140758
TU177067 other upstream 3185654 11694006 ~ 11733762 (-) True G140757

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU287303 False 1913 lncRNA 0.43 4 NC_053132.1 12837879 ~ 12851003 (-)