RNA id: AMCG00002996



Basic Information


Item Value
RNA id AMCG00002996
length 3266
RNA type mRNA
GC content 0.37
exon number 7
gene id AMCG00002996
representative True

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9236740 ~ 9244099 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTCGTTCCTGACTGGGCGGCTGTAGCTCTTCCGGGCGCgttgttttgaatgatttattaattgtattaccaccccaaaaacaaattaaacaaatgtccTTCCATAACGTGTCCAAAGAGGCTCTGTGGGGCACTGCGGCACTCGGGGCTGTTTTTGCCGCAGGTTTATGGATTGgaAAAGGCAAATCCCAAGCTTTTGGCAGCACGACCATCTTTAAGAGTCACAGCAAAGGTGCAAAAGACAACCCCTTGATGAAGTATGTACTTGATCATTCTATGAGAGAGCACCCTGCACTGAAGAAGCTCCGACTGAAAACCCTAGAAGATCGATTCAGTGGGATGATGGTAGCTTGTGAACAATCCCAGCTGATGGCCAACCTAGCAAAGCTAATTAAAGCCAAAAAAGCACTTGAAATTGGGGTCTATACAGGGTACAATGCTTTAAATATAGCACTCACATTGCCAGAAGATGGACGAGTTGTGGCCTGTGATATCAGTGAAGCCTTACCCAACATGGGAAGGCCATTCTGGAAAGAAGCAGGAGTTGAGCACAAAATCGACCTACGGATACAGCCAGCCTTGAAAACCCTCgATGATCTTTTAGCAGCCGGTGAAGCAGAGTCCTTTGACTTTGCCTTTATCGATGCTGACAAACAGAATTATGACCATTATTATGAGAAGTGCTTGCAGCTTATTAGGAAAGGAGGAATTATAGCCATTGATAATGTGCTCTGGAGCGGAAGGGTTTTGAACCCAGAAGCAGATGATCTGGACTCGCAATGCATTGACAAGCTAAATAAGAAGATTTATAGAGATGTCAGGGTCAATGTTAGCATGCTAACTGTAGGAGATGGACTAACACTAGCATTTAAGCTCTAAATTCCAGTTTGAGGTTACATACCTTTGGCACAAATTATCCGATCGTAACTCTTCTAATTAAGGCAAACAATTCTGTGACTTTTATAAATCAGAGCTTTTGTGTCCCATATTCATCAACTGCCAAAATGGgtttcaatttttcattaaatgtttgaCATTCCAGATTaagaatttatgtattttgactACCTGGGTTGATCAGACTTTACAACACACAAATGTAGGTGTCTTCTGCTTAAACACTGCTGCAGAACTGGCTATTAGACTTCATTTTCTATCATGTTTACCAATGACTTAACACTAATTCAAACTTGAATtattaacacaaaaacatgctTCTGCAATGTAGGCTGATATTGTGCTCAACACTTTGGAGAACTTGGCATATTGGGTAGAGGTCAAAACAAACCATTGAAAAAGAAATCTTTGCAATAGTGAGTGTCCAATAGTTTGTTGTATTCTTCTCAAAGGTGCTTTGCTGCACTTTCATACTAAATATTTTTACCTTGTCTGTTATAAGTACAAAAGTATGCCTTAAATACAATGATAAAACCAATCAAATACTCTACCATGTCTAGATTTCTTAAATTGTCTCCCTCTCCTATTCAATCTTTCTTTTAGTgtacaacaaatgtatttgatatgcAGATTCTACACAGGTGTAGTCACATCACACAGGTTTCTCTGAATCCAGTCAACAGTTTTGATAATCACACCCCCTGAAAAATTATATCGATTTATTGTGCATCATACTTGGGGATGGaaacttaaaatataacttAGAGGAAATATTGGGATTTGTataacaatttcaaaatgtaccaTTAAATTACCTTATCGGTTTCTATAATGGCAAATTCAGTTAACTAATttgtacaataaaaacatttgggggggaaaaaatctgaTTGATTCACATTTGATGCTGTTCTCTTTAAACACTTGTAGTGGTGAAGTTTAACTTGAAAATGAATCCACAACAAATGTTACAGCAGTTATATAACAAATGAACTAGGCCTAAATATCAAGATGTAcaacatttgtaattataaataatgatacatgttttgtaaaataaacgtTCCCTTTCATTTACTTTAACTGACGCAAATAGGCTGTACTGATAagctaaaacaaacaatacaagtaGGCCTAccaaaaatcaataaaagaaaTGGCATAGCCTTTCTGACTTCATGTCTTTCATATTCTCAACTTGCTACTGAAATCGCGATCTATTTATGCATGCATTGGTGTATGTTGGTCTACTACAGTACAATCCAAAATATTGTTCAAAGAATACAATGGGAGTGTAAAAAAGCTTAACTAGATGGTCAAGTGCAAGTTCAAATATGCGGTTAATAGCTGTGGATTTGCAAACTAAATATCGCTGATTCTTGTGCTGCACAGCGATTTCCTATCTAAACCTTGTGATTGTCAATGTCCCACAAGGCACATGTAAGTTTATAATGCGTTTAACCGACACGGTATCTACCTGAAAAGGCATTACAAATCGGTAATATATATAGCAAGAGTTAGAATAACTGCCATATGAATCACATACCAGTGACATTTGCTTTGTAATCTACAAAGGTCGGGGCTCTGacggtaaatgtccttgagtggccttTATCATGTAGTTTTGCATCTCACCATTTCTGCATCCCatctctatttatttaattccccGGACCACctaatgtatacaaaataatattgaaaagtgtttttaaagtaatatgtgtGTTGATATAAAGCAATAGCGAAATGCATAGTTTCAGTTTGCGACATGCCCATTCCTTGTAGAAACGACCTACAATTTGTGGTGATATTCTTGGCAATGGAAACGCGTAACGCAACGAAAACTGatgtaaaaccttttttaagtACTCTTAAATTGCTGCTGCCTTTAACTCAGCAAAGTTTTCAATACTGTGCCAGGGTCCATTTTCTACTCCCGTGATGTACAGCCCCTATCCATACTGTTTTGAGTAACTGCCACAGTCAATCACAAgtatggtaaaataataaatacaataaaacaaatcaacactTCTGCATGGAAACAGGTGGttagaaataaaatcagcaAATTTACTAAACACTTCACAGATAATTTGTTCAATATGTCCATTTCCTAACGTAACCAAATTCAAATAGGTTGTCCAGAGAAATTAGGAGTGATATTTGCCAAAAATTAGTGTACTCTTTTGGCTCCACAGTGCACATTGCACGAAAGCGTCCTGGTGCCGATAAAAAAACTCATCATTTAACTCATcaaattgtcatcattttggctctttacgccaccacaatgatttgaaaagaaacaatcaagatgtgctttaagtgtatactttgatttttaattttagggtagttacatcc

Function


GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008171 O-methyltransferase activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU176097 lncRNA upstream 90168 9146301 ~ 9146572 (+) True G140002
TU176094 lncRNA upstream 276315 8958739 ~ 8960425 (+) True G139999
TU176093 lncRNA upstream 303771 8932750 ~ 8932969 (+) True G139998
TU176092 lncRNA upstream 316010 8920468 ~ 8920730 (+) True G139997
TU176090 lncRNA upstream 385054 8850179 ~ 8851686 (+) True G139995
TU176280 lncRNA downstream 486549 9730648 ~ 9730863 (+) True G140156
TU176316 lncRNA downstream 522987 9767086 ~ 9773065 (+) True G140188
TU176318 lncRNA downstream 537835 9781934 ~ 9785792 (+) True G140190
TU176320 lncRNA downstream 543648 9787747 ~ 9788069 (+) True G140192
TU176343 lncRNA downstream 600785 9844884 ~ 9853426 (+) False AMCG00003019
AMCG00002994 mRNA upstream 80605 9153964 ~ 9156135 (+) True AMCG00002994
AMCG00002992 mRNA upstream 418776 8794807 ~ 8817964 (+) True AMCG00002992
AMCG00002991 mRNA upstream 466664 8739738 ~ 8770076 (+) True AMCG00002991
AMCG00002990 mRNA upstream 594302 8641915 ~ 8642438 (+) True AMCG00002990
AMCG00002989 mRNA upstream 601463 8584494 ~ 8635277 (+) True AMCG00002989
AMCG00002995 mRNA downstream 24818 9268917 ~ 9273158 (+) True AMCG00002995
AMCG00002998 mRNA downstream 56212 9300311 ~ 9316633 (+) False AMCG00002998
AMCG00002997 mRNA downstream 72632 9316731 ~ 9325141 (+) True AMCG00002997
AMCG00003002 mRNA downstream 249952 9494051 ~ 9508297 (+) True AMCG00003002
AMCG00003008 mRNA downstream 318181 9562280 ~ 9575635 (+) True AMCG00003008
TU175890 other upstream 1192520 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 1309908 7923182 ~ 7926832 (+) True G139784
TU175723 other upstream 1857253 7376687 ~ 7379487 (+) True G139720
TU175613 other upstream 2163204 7066943 ~ 7073536 (+) True AMCG00002939
TU175429 other upstream 3083620 6147748 ~ 6153120 (+) True G139492
TU176130 other downstream 57513 9301612 ~ 9304840 (+) True AMCG00002998
TU176137 other downstream 81389 9325488 ~ 9330464 (+) True G140030
TU176317 other downstream 534151 9778250 ~ 9780452 (+) True G140189
TU176681 other downstream 1510802 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 1965474 11209573 ~ 11212111 (+) True G140613

Expression Profile