RNA id: TU176130


Basic Information

Item Value
RNA id TU176130
length 1406
RNA type TUCP
GC content 0.36
exon number 3
gene id AMCG00002998
representative True

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9300311 ~ 9316633 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACAAGAAGTCACTTAGACAGAATAAACACCAGGAGCCTTCACTTATTTCATTGTAATTCAGATAAATGACATCTTTGAAAGAACATGGAACAGGAAATCTGTTTGTCAAGGAAATGGAAACTATTTTGGATACATGCAAAGTAGGATTGACCCCAGTTGACGAGTGCTATAGCCCAAAACAGGAATGCCTTACAGAAAATGGGTTTTACCCACGTATTAAATGCTGCACATTCCAAGCAGGGCTGCATAGGGGACCAAGCCTTCTATGGCAAAGACATTCAATACTACGGCATCCCTGCGGAGGACTCCTTGAACTTTGACCTGAGCGTTCAATTCAGACCTGCCGCGGATTTCATTCACAAAggcctgaaaaagaaaaatgGAAAGGTGTTCGTGCACTGCATTATGGGAATAAGTCGATCCTCTACTTTGGTGCTGGCTTACCTCATGTTGTATCACCACCTCTCTCTACGCGATGCCATCCTAAAGGTCATTCAGAGCAGATTTATTTATCCCAACAGGAATTTCCTTCGACAATTAGGTGATCTGGATAaccaattaaaaaggaaacgaAGAATGTGTCTTCTCCTCTGACAAAGAGAAGAAGAGAAATAAGATGAGGACAATTTCAATCAATCTCTGAAGCTGCTGccgtttgtatttattttgtggttactgttgctgttttgtggtatttttttaaataatctaggttataatatatatactgttctGCTACACCAAATGTAATGGTACTGTGGTCCGCTGGGAGTATTTAAATCACTAGGTCACAAAGGTTACATGAACTTATGATGGTCCTGAAATGTAAGCAAAATGATAATGCATGTCAAGCATTCCTTTCGATGGTTggaccattttattattttgaacagagcagaagaataaataataggttcagaaaagaaaaaaatcaaaaaggtATTTTGAAGATATACAAGTAGGTCTCTATATTAACGTGTTATTCTAGGCACTATAACATTAgtattttagttgattttaatCCTTGGTATCCTCTTTGGATAAAAAGGCCAGAGATTTGCACTtaggatttttgtatttaaagtaagaaATCCCTGCTGATGAAAGCAAAGACAGGGCTGtagggaaggggaaaaaaaaaaaaaaaaagcattctgtTAAAGGAAGAATTTAAGTTTCTCGTCATGCTCTactgaaacagaaatgtgaaCTAAGAAAGCCAAATTGAGCCAATAACAATGACTTTTGCTGAATATAAAATGGGGGGTAGAATCTGTGTGAAGTCTCcaccagaataaaaacaaatgtttcatttgttgtggcattacaattcctaacaaatgcaacaaaaaattaaaatattctttgTACATGaagtaataaatgcatattttaaaagagaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176111 lncRNA upstream 57770 9243131 ~ 9243842 (+) False AMCG00002996
TU176097 lncRNA upstream 155040 9146301 ~ 9146572 (+) True G140002
TU176094 lncRNA upstream 341187 8958739 ~ 8960425 (+) True G139999
TU176093 lncRNA upstream 368643 8932750 ~ 8932969 (+) True G139998
TU176092 lncRNA upstream 380882 8920468 ~ 8920730 (+) True G139997
TU176280 lncRNA downstream 425808 9730648 ~ 9730863 (+) True G140156
TU176316 lncRNA downstream 462246 9767086 ~ 9773065 (+) True G140188
TU176318 lncRNA downstream 477094 9781934 ~ 9785792 (+) True G140190
TU176320 lncRNA downstream 482907 9787747 ~ 9788069 (+) True G140192
TU176343 lncRNA downstream 540044 9844884 ~ 9853426 (+) False AMCG00003019
AMCG00002995 mRNA upstream 28454 9268917 ~ 9273158 (+) True AMCG00002995
AMCG00002996 mRNA upstream 57513 9236740 ~ 9244099 (+) True AMCG00002996
AMCG00002994 mRNA upstream 145477 9153964 ~ 9156135 (+) True AMCG00002994
AMCG00002992 mRNA upstream 483648 8794807 ~ 8817964 (+) True AMCG00002992
AMCG00002991 mRNA upstream 531536 8739738 ~ 8770076 (+) True AMCG00002991
AMCG00002997 mRNA downstream 11891 9316731 ~ 9325141 (+) True AMCG00002997
AMCG00003002 mRNA downstream 189211 9494051 ~ 9508297 (+) True AMCG00003002
AMCG00003008 mRNA downstream 257440 9562280 ~ 9575635 (+) True AMCG00003008
AMCG00003009 mRNA downstream 274759 9579599 ~ 9583885 (+) True AMCG00003009
AMCG00003007 mRNA downstream 324972 9629812 ~ 9633358 (+) True AMCG00003007
TU175890 other upstream 1257392 8037577 ~ 8044220 (+) True AMCG00002965
TU175799 other upstream 1374780 7923182 ~ 7926832 (+) True G139784
TU175723 other upstream 1922125 7376687 ~ 7379487 (+) True G139720
TU175613 other upstream 2228076 7066943 ~ 7073536 (+) True AMCG00002939
TU175429 other upstream 3148492 6147748 ~ 6153120 (+) True G139492
TU176137 other downstream 20648 9325488 ~ 9330464 (+) True G140030
TU176317 other downstream 473410 9778250 ~ 9780452 (+) True G140189
TU176681 other downstream 1450061 10754901 ~ 10756840 (+) True G140478
TU176867 other downstream 1904733 11209573 ~ 11212111 (+) True G140613
TU176980 other downstream 2181351 11486191 ~ 11487884 (+) True G140693

Expression Profile