Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00003007 |
| length | 1239 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 6 |
| gene id | AMCG00003007 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030139.1 |
| NCBI id | CM030139.1 |
| chromosome length | 23121578 |
| location | 9629812 ~ 9633358 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0090304 | nucleic acid metabolic process | biological_process |
| GO:0006139 | nucleobase-containing compound metabolic process | biological_process |
| GO:0006725 | cellular aromatic compound metabolic process | biological_process |
| GO:1901360 | organic cyclic compound metabolic process | biological_process |
| GO:0046483 | heterocycle metabolic process | biological_process |
| GO:0044422 | obsolete organelle part | cellular_component |
| GO:0044428 | obsolete nuclear part | cellular_component |
| GO:0070013 | intracellular organelle lumen | cellular_component |
| GO:0044446 | obsolete intracellular organelle part | cellular_component |
| GO:0032991 | protein-containing complex | cellular_component |
| GO:0031974 | membrane-enclosed lumen | cellular_component |
| GO:0043233 | organelle lumen | cellular_component |
| id | description |
|---|---|
| ko03013 | Nucleocytoplasmic transport |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU176111 | lncRNA | upstream | 385970 | 9243131 ~ 9243842 (+) | False | AMCG00002996 |
| TU176097 | lncRNA | upstream | 483240 | 9146301 ~ 9146572 (+) | True | G140002 |
| TU176094 | lncRNA | upstream | 669387 | 8958739 ~ 8960425 (+) | True | G139999 |
| TU176093 | lncRNA | upstream | 696843 | 8932750 ~ 8932969 (+) | True | G139998 |
| TU176092 | lncRNA | upstream | 709082 | 8920468 ~ 8920730 (+) | True | G139997 |
| TU176280 | lncRNA | downstream | 97290 | 9730648 ~ 9730863 (+) | True | G140156 |
| TU176316 | lncRNA | downstream | 133728 | 9767086 ~ 9773065 (+) | True | G140188 |
| TU176318 | lncRNA | downstream | 148576 | 9781934 ~ 9785792 (+) | True | G140190 |
| TU176320 | lncRNA | downstream | 154389 | 9787747 ~ 9788069 (+) | True | G140192 |
| TU176343 | lncRNA | downstream | 211526 | 9844884 ~ 9853426 (+) | False | AMCG00003019 |
| AMCG00003009 | mRNA | upstream | 45927 | 9579599 ~ 9583885 (+) | True | AMCG00003009 |
| AMCG00003008 | mRNA | upstream | 54177 | 9562280 ~ 9575635 (+) | True | AMCG00003008 |
| AMCG00003002 | mRNA | upstream | 121515 | 9494051 ~ 9508297 (+) | True | AMCG00003002 |
| AMCG00002997 | mRNA | upstream | 304671 | 9316731 ~ 9325141 (+) | True | AMCG00002997 |
| AMCG00002998 | mRNA | upstream | 313179 | 9300311 ~ 9316633 (+) | False | AMCG00002998 |
| AMCG00003018 | mRNA | downstream | 109080 | 9742438 ~ 9742839 (+) | True | AMCG00003018 |
| AMCG00003019 | mRNA | downstream | 211418 | 9844776 ~ 9853453 (+) | True | AMCG00003019 |
| AMCG00003020 | mRNA | downstream | 267909 | 9901267 ~ 9920544 (+) | True | AMCG00003020 |
| AMCG00003023 | mRNA | downstream | 290323 | 9923681 ~ 9926024 (+) | True | AMCG00003023 |
| AMCG00003024 | mRNA | downstream | 296081 | 9929439 ~ 9937381 (+) | True | AMCG00003024 |
| TU176137 | other | upstream | 299348 | 9325488 ~ 9330464 (+) | True | G140030 |
| TU176130 | other | upstream | 324972 | 9301612 ~ 9304840 (+) | True | AMCG00002998 |
| TU175890 | other | upstream | 1585592 | 8037577 ~ 8044220 (+) | True | AMCG00002965 |
| TU175799 | other | upstream | 1702980 | 7923182 ~ 7926832 (+) | True | G139784 |
| TU175723 | other | upstream | 2250325 | 7376687 ~ 7379487 (+) | True | G139720 |
| TU176317 | other | downstream | 144892 | 9778250 ~ 9780452 (+) | True | G140189 |
| TU176681 | other | downstream | 1121543 | 10754901 ~ 10756840 (+) | True | G140478 |
| TU176867 | other | downstream | 1576215 | 11209573 ~ 11212111 (+) | True | G140613 |
| TU176980 | other | downstream | 1852833 | 11486191 ~ 11487884 (+) | True | G140693 |
| TU177209 | other | downstream | 2740608 | 12373966 ~ 12374360 (+) | False | AMCG00003129 |
